View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_high_16 (Length: 255)
Name: NF20882_high_16
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 31691203 - 31691435
Alignment:
| Q |
8 |
aagcataggataataactcttgtaactaactaaaaactaacttgagctagttacgtgtagtgcaattacaattagtggattcaatctttctattatcttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691203 |
aagcataggataataactcttgtaactaactaaaaactaacttgagctagttacgtgtagtgcaattacaattagtggattcaatctttctattatcttc |
31691302 |
T |
|
| Q |
108 |
gtgatgcaatgacgagagaaaccaaagcacccaaactgataccgtgaaaatcacgcaagactttccatccctt-ggagaagaacacaaaatcattcattc |
206 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
31691303 |
gtgatgcaataacgagagaaaccaaagcacccaaactgataccgtgaaaatcacgcaagactttccatcccttgggagaagaacacagaatcattcattc |
31691402 |
T |
|
| Q |
207 |
tttcaaccaacaccttgaacttattgttctttg |
239 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
31691403 |
tttcaaccaacaccttgaacatattgttctttg |
31691435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 27488035 - 27488147
Alignment:
| Q |
8 |
aagcataggataataactcttgtaactaactaaaaactaacttgagctagttacgtgtagtgcaa----ttacaattagtggattcaatctttctattat |
103 |
Q |
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|||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| || ||||||| |||||||||| || |||||||||||| || | |
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| T |
27488035 |
aagcatagaataataactcttgtaactaactgaaa-ctaacttgagcaagttacttgcagtgcaagttattacaattagaggtttcaatctttctgtttt |
27488133 |
T |
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| Q |
104 |
cttcgtgatgcaat |
117 |
Q |
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| T |
27488134 |
cttcgtgatgcaat |
27488147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 27480683 - 27480795
Alignment:
| Q |
8 |
aagcataggataataactcttgtaactaactaaaaactaacttgagctagttacgtgtagtgcaa----ttacaattagtggattcaatctttctattat |
103 |
Q |
| |
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|||||||| ||||||||||| ||||||||| | |||||||||||||| |||||| || ||||||| |||||||||| || |||||||||||| || | |
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| T |
27480683 |
aagcatagaataataactctagtaactaac-agaaactaacttgagcaagttacttgcagtgcaagttattacaattagaggtttcaatctttctgtttt |
27480781 |
T |
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| Q |
104 |
cttcgtgatgcaat |
117 |
Q |
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|||||||||||||| |
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| T |
27480782 |
cttcgtgatgcaat |
27480795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 43113120 - 43113235
Alignment:
| Q |
124 |
agaaaccaaagcacccaaactgataccgtgaaaatcacgcaagactttccatcccttggagaagaacacaaaatcattcattctttcaaccaacaccttg |
223 |
Q |
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||||||| |||||||||| ||||| || | ||||||||||||| |||||||||||||||||| || ||| | ||| ||||||||||||||||||| | |
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| T |
43113120 |
agaaacccaagcacccaagctgatcccataaaaatcacgcaaggatttccatcccttggagaaaaatacagacccatcaattctttcaaccaacacctcg |
43113219 |
T |
|
| Q |
224 |
aacttattgttctttg |
239 |
Q |
| |
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|||| |||| |||||| |
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| T |
43113220 |
aactgattgctctttg |
43113235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 28138557 - 28138452
Alignment:
| Q |
122 |
agagaaaccaaagcacccaaactgataccgtgaaaatcacgcaagactttccatcccttggagaagaacacaaaatcattcattctttcaaccaacacct |
221 |
Q |
| |
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||||||||| |||||||||| |||| || | ||||||||||||| |||||||||||||||||| ||||| | ||| ||||||||||||||||||| |
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| T |
28138557 |
agagaaacccaagcacccaagttgatcccataaaaatcacgcaaggatttccatcccttggagaaaaacactgacccatcaattctttcaaccaacacct |
28138458 |
T |
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| Q |
222 |
tgaact |
227 |
Q |
| |
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||||| |
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| T |
28138457 |
cgaact |
28138452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 16727416 - 16727487
Alignment:
| Q |
122 |
agagaaaccaaagcacccaaactgataccgtgaaaatcacgcaagactttccatcccttggagaagaacaca |
193 |
Q |
| |
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||||||||| |||||||||| ||||| || | ||||||||||||| |||||||||||||||||| |||||| |
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| T |
16727416 |
agagaaacccaagcacccaagctgatcccataaaaatcacgcaagcatttccatcccttggagaaaaacaca |
16727487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8368389 - 8368428
Alignment:
| Q |
6 |
agaagcataggataataactcttgtaactaactaaaaacta |
46 |
Q |
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||||||||||||||||||||| |||||||||||| |||||| |
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| T |
8368389 |
agaagcataggataataactc-tgtaactaactataaacta |
8368428 |
T |
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