View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_high_18 (Length: 251)
Name: NF20882_high_18
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 48254406 - 48254164
Alignment:
| Q |
1 |
atcgtaatgatcccttaaatgnnnnnnngtttcttacatgaaacaggtcttcaatatggtacaaaagcatgttgtggatatggtggaggtgaatacaact |
100 |
Q |
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| T |
48254406 |
atcgtaatgatcccttaaatgtttttttgtttgttacatgaaacaggtcttcaatatggtacaaaagcatgttgtggatatggtggaggtgaatacaact |
48254307 |
T |
|
| Q |
101 |
tcgatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaacagcatgtgatgacccttacaactatgtgagttgggatgg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48254306 |
tcaatcctaaagtgtattgtggaaatacaaaggagataaatggaaaaagagtgacagcaacagcatgtgatgacccttacaactatgtgagttgggatgg |
48254207 |
T |
|
| Q |
201 |
gattcatgctacagaagctgcaagcaagcttataacctatgct |
243 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48254206 |
gattcatgccacagaagctgcaagcaagcttataacctatgct |
48254164 |
T |
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