View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20882_high_2 (Length: 637)

Name: NF20882_high_2
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20882_high_2
NF20882_high_2
[»] chr2 (7 HSPs)
chr2 (337-632)||(20926691-20926987)
chr2 (337-632)||(20934046-20934371)
chr2 (337-614)||(20952602-20952897)
chr2 (337-630)||(39273671-39273958)
chr2 (19-155)||(20925081-20925220)
chr2 (275-339)||(20925978-20926042)
chr2 (475-632)||(20923231-20923388)
[»] chr1 (16 HSPs)
chr1 (472-612)||(3218662-3218802)
chr1 (474-609)||(3372443-3372578)
chr1 (467-631)||(4323234-4323398)
chr1 (472-629)||(2006205-2006362)
chr1 (474-613)||(3361471-3361610)
chr1 (494-600)||(3345323-3345429)
chr1 (467-613)||(4335151-4335297)
chr1 (480-623)||(3349141-3349284)
chr1 (527-626)||(6601881-6601980)
chr1 (546-629)||(2010377-2010460)
chr1 (527-626)||(6592629-6592728)
chr1 (480-632)||(2948587-2948739)
chr1 (527-629)||(2011768-2011870)
chr1 (480-623)||(3340267-3340410)
chr1 (527-629)||(2019577-2019679)
chr1 (364-410)||(4335353-4335399)
[»] chr4 (1 HSPs)
chr4 (474-628)||(21237288-21237442)
[»] chr5 (1 HSPs)
chr5 (473-623)||(17969613-17969763)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 337 - 632
Target Start/End: Original strand, 20926691 - 20926987
Alignment:
Q  337 attcttgtatgtatacatagatacctgtatacactaacctagtttgttttctgattcgtgtatgtacctttgtttgaacagggaagaaaacaaacaaagt 436  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20926691 attcttgtatgtacacatagatacctctatacactaacctagtttgttttctgattcgtgtatgtacctttgtttgaacagggaagaaaacaaacaaagt 20926790  T
Q  437 ctactcccagaaaaatgattgatgtggaaccggatccggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattag 536  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20926791 cttctcccagaaaaatgattgatgtggaaccggatccggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacgtgccaattag 20926890  T
Q  537 ggaagcagcgagaacaagtgttttatct-aaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctgctgc 632  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20926891 ggaagcagcgagaacaagtgttttatctaaaaaaatggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtctctgctgc 20926987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 337 - 632
Target Start/End: Original strand, 20934046 - 20934371
Alignment:
Q  337 attcttgtatgtatacatagatacctgtatacactaacctagtttgttttctgattcgtgtatgtacctttgtttgaa------------------cagg 418  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| | |||||  ||||||||||||||                  ||||    
T  20934046 attcttgtatgcatacatagatacctatatgcactaacctagtttgttttctgaattgtgtacttacctttgtttgaatatgaatatatctatctccagg 20934145  T
Q  419 gaagaaaacaaacaaagtctactcccagaaaaatgattgatgtggaa------------ccggatccggatagaattagttgcttacctgatcatgtaat 506  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||            |||||||| |||||||| ||||||||||| | |||||||||    
T  20934146 gaagaaaacaaacaaagtctactccccgaaaagtgattgatgtggaaccagaaccggaaccggatcctgatagaataagttgcttaccaggtcatgtaat 20934245  T
Q  507 agatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtg 606  Q
    ||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  20934246 agaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatggaggaacaaatggtacacactcccaaatcttgtg 20934345  T
Q  607 tttgatagtcaatgtgtctctgctgc 632  Q
    |||||||| |||||| ||||||||||    
T  20934346 tttgatagacaatgtctctctgctgc 20934371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 337 - 614
Target Start/End: Original strand, 20952602 - 20952897
Alignment:
Q  337 attcttgtatgtatacatagatacctgtatacactaacctagtttgttttctgattcgtgtatgtacctttgtttgaa------------------cagg 418  Q
    ||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||| | |||||||||||||||||||                  ||||    
T  20952602 attcttgtatgcatacatagatacctatatacactaaccgagtttgttatctgatttgcgtatgtacctttgtttgaatatgaatatatctatctacagg 20952701  T
Q  419 gaagaaaacaaacaaagtctactcccagaaaaatgattgatgtggaaccggatccggatagaattagttgcttacctgatcatgtaatagatcagattct 518  Q
    ||| |||||||| ||| |||||||||  |||  | ||||||| | ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||    
T  20952702 gaaaaaaacaaaaaaattctactccccaaaaggttattgatgagcaaccggatccggatagaataagttgcttaccaggtcatgtaatagatcagattct 20952801  T
Q  519 aacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatag 614  Q
     |||||| ||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||    
T  20952802 gacttacttgcaaattagggatgcagtgagaacaagtgttttatctagaaaatggaggaacaaatggaacacacttccaaatcttgtgtttgatag 20952897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 337 - 630
Target Start/End: Original strand, 39273671 - 39273958
Alignment:
Q  337 attcttgtatgtatacatagatacctgtatacactaacctagtttgttttctgattcgtgtatgtacctttgtttgaacagggaagaaaacaaacaaagt 436  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||||||| |||||| ||| || |  | | | |  | |||||||||||| || |||||    
T  39273671 attcttgtatgcatacttagatacatatatacactaacctagtttgttttttgattcctgtttgaatatatctatctaaagggaagaaaacgaagaaagt 39273770  T
Q  437 ctactcccagaaaaatgattgatgtggaaccggatccggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattag 536  Q
    ||||| || ||||| | |||||||      | || | ||||||||||||||||||||| | |||||||||||||||||||||  ||| | ||||||||||    
T  39273771 ctactacccgaaaagtaattgatg------cagagctggatagaattagttgcttaccgggtcatgtaatagatcagattctgtcttgcttgccaattag 39273864  T
Q  537 ggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctgct 630  Q
    |||||||| ||||||||||||||| || |   |||||||| ||||| ||||||||||||||||||||||||||||||| |  ||||||||||||    
T  39273865 ggaagcagtgagaacaagtgttttgtccagccaatggaggtacaaatggtacacactaccaaatcttgtgtttgatagacgttgtgtctctgct 39273958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 20925081 - 20925220
Alignment:
Q  19 caaaatacaatcaaaatttatcttttgtaacaactattaggataggtgtaataatccactttcttgtctataaagtgttttaaattttactaag---nnn 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||          
T  20925081 caaaatacaatcaaaatttatcttttgtaacaactatttggataggtgtaataatccactttcttgtctataaagtgtttcaaattttaccaagaaaaaa 20925180  T
Q  116 nnnngtgttcaaaattttttctctgtaaattttactggcc 155  Q
        |||||||||||||||||||||||||||||| |||||    
T  20925181 aaaagtgttcaaaattttttctctgtaaattttaatggcc 20925220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 20925978 - 20926042
Alignment:
Q  275 tatatcccaacttgtgaaccaagtgcctagtttcacaaattttatgactagaatgttgatacatt 339  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20925978 tatatcccagcttgtgaaccaagtgcctagtttcacaaattttataactagaatgttgatacatt 20926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 632
Target Start/End: Original strand, 20923231 - 20923388
Alignment:
Q  475 gatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatgga 574  Q
    |||||||||||||||||||| |||||| ||||||| ||  ||||  |   | || |||| | |||||||| ||||||||||||||||||||| |||||||    
T  20923231 gatagaattagttgcttaccagatcatataatagaccattttctttcacgcttgtcaatcaaggaagcagggagaacaagtgttttatctaacaaatgga 20923330  T
Q  575 ggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctgctgc 632  Q
    |||| ||| ||| ||||| |||  |||||||||| ||||  |||||||| ||||||||    
T  20923331 ggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgctgc 20923388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 472 - 612
Target Start/End: Complemental strand, 3218802 - 3218662
Alignment:
Q  472 ccggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaat 571  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||  | ||| |||||||||||||||||| || |||||||||||| || |   |||    
T  3218802 ccggatagaattagttgcttaccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtccagtgaat 3218703  T
Q  572 ggaggaacaaagggtacacactaccaaatcttgtgtttgat 612  Q
    ||||||| ||| || |||||||||||||| |||||||||||    
T  3218702 ggaggaataaatggcacacactaccaaatattgtgtttgat 3218662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 474 - 609
Target Start/End: Original strand, 3372443 - 3372578
Alignment:
Q  474 ggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatgg 573  Q
    ||||||||||||||||||||| | |||||||||||||||||||||  |   |||||||||||  ||||||| |||||||||||||||||| |  |  |||    
T  3372443 ggatagaattagttgcttaccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctgg 3372542  T
Q  574 aggaacaaagggtacacactaccaaatcttgtgttt 609  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3372543 aggaacaaatggtacacactaccaaatcttgtgttt 3372578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 467 - 631
Target Start/End: Complemental strand, 4323398 - 4323234
Alignment:
Q  467 cggatccggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaa 566  Q
    |||| ||||||||||||||||| || || | |||||||| |||||||||| |  ||||| |||| |||||||| |||| ||||||||||||||| || |     
T  4323398 cggaaccggatagaattagttggttgccaggtcatgtaacagatcagattatgtcttacttgccgattagggacgcagtgagaacaagtgttttgtcgag 4323299  T
Q  567 aaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctgctg 631  Q
     || |||||||| ||| |||| ||||| |||||||||||| ||||||| |||||||| |||||||    
T  4323298 gaattggaggaaaaaatggtatacacttccaaatcttgtgcttgatagacaatgtgtgtctgctg 4323234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 472 - 629
Target Start/End: Original strand, 2006205 - 2006362
Alignment:
Q  472 ccggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaat 571  Q
    ||||||||||||||||  ||||  | | ||||||||||  |||||||  |  || |||||||||||||||| | |||||||||||||||||| || ||||    
T  2006205 ccggatagaattagttatttactaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaat 2006304  T
Q  572 ggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctgc 629  Q
    ||||| ||||| ||  |||| |||||||||||||||||||||  ||||||||||||||    
T  2006305 ggaggtacaaatgggccacaataccaaatcttgtgtttgataaacaatgtgtctctgc 2006362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 474 - 613
Target Start/End: Original strand, 3361471 - 3361610
Alignment:
Q  474 ggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatgg 573  Q
    ||||||||||||||||||||| ||||| |||||||| |||||  |  | ||| ||||||| | |||||||| |||||||||| ||||||| |  ||||||    
T  3361471 ggatagaattagttgcttaccagatcacgtaatagaccagatcttgtcatacttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatgg 3361570  T
Q  574 aggaacaaagggtacacactaccaaatcttgtgtttgata 613  Q
    || |||||| ||||||| |||||||||||||| |||||||    
T  3361571 agtaacaaatggtacacgctaccaaatcttgtatttgata 3361610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 494 - 600
Target Start/End: Complemental strand, 3345429 - 3345323
Alignment:
Q  494 ctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacact 593  Q
    ||||||||||| |||| ||||||||| ||||| |||||||||||||||||| ||||| ||||||| |||| ||||||||||| ||||||  ||||||| |    
T  3345429 ctgatcatgtagtagaccagattctatcttacttgccaattagggaagcagtgagaataagtgttatatccaaaaaatggagaaacaaattgtacacaat 3345330  T
Q  594 accaaat 600  Q
    |||||||    
T  3345329 accaaat 3345323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 467 - 613
Target Start/End: Complemental strand, 4335297 - 4335151
Alignment:
Q  467 cggatccggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaa 566  Q
    |||| ||||||||||||||||| ||||| | |||||||||||| |||||| |  ||||  |||| |||||||| || | ||||||||||||||| || |     
T  4335297 cggaaccggatagaattagttggttaccaggtcatgtaatagaccagattatgtcttatttgccgattagggacgcggtgagaacaagtgttttgtcgag 4335198  T
Q  567 aaaatggaggaacaaagggtacacactaccaaatcttgtgtttgata 613  Q
     || |||||||| ||| |||| ||||| ||||||||||| |||||||    
T  4335197 gaattggaggaaaaaatggtatacacttccaaatcttgtatttgata 4335151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 480 - 623
Target Start/End: Original strand, 3349141 - 3349284
Alignment:
Q  480 aattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaac 579  Q
    ||||||||||||||| |||||| | ||||| ||||||||  |  || || |||||| |||| |||  ||||||||||| ||||| |   ||||||||||     
T  3349141 aattagttgcttaccagatcatcttatagagcagattctctcacacttgacaattaaggaatcagtaagaacaagtgtgttatcgagcgaatggaggaag 3349240  T
Q  580 aaagggtacacactaccaaatcttgtgtttgatagtcaatgtgt 623  Q
    ||| ||| |||||||||| |||||||||||||||||| ||||||    
T  3349241 aaatggtccacactaccagatcttgtgtttgatagtctatgtgt 3349284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 527 - 626
Target Start/End: Complemental strand, 6601980 - 6601881
Alignment:
Q  527 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctc 626  Q
    ||||||||| |||||||| |||||||||| ||||||| |  ||||||||| ||||| ||  |||||| |||||||||||||||||||| |||||| ||||    
T  6601980 tgccaattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctc 6601881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 629
Target Start/End: Original strand, 2010377 - 2010460
Alignment:
Q  546 gagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctgc 629  Q
    |||||||||||||||||  || ||||||||| ||||| ||  |||| |||||||||||||||||||||  ||||||||||||||    
T  2010377 gagaacaagtgttttatgcaacaaatggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgtctctgc 2010460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 626
Target Start/End: Complemental strand, 6592728 - 6592629
Alignment:
Q  527 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctc 626  Q
    ||||||||| ||||||||| ||||||||| |||||||||  || |||||| ||||| ||  |||||| ||||||||||||||||||| | ||||| ||||    
T  6592728 tgccaattaaggaagcagccagaacaagtattttatctaccaactggaggtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctc 6592629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 632
Target Start/End: Complemental strand, 2948739 - 2948587
Alignment:
Q  480 aattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaac 579  Q
    ||||||||||||||| |||||| | ||||  ||||||||  |  || || |||||| ||||||||  | ||||||||| ||||| |   ||||||||||     
T  2948739 aattagttgcttaccagatcatcttatagggcagattctctcacacttgacaattaaggaagcagtaacaacaagtgtgttatcgagcgaatggaggaat 2948640  T
Q  580 aaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctgctgc 632  Q
    ||| ||| ||||| |||| |||||||||||||||||| |||||| ||| ||||    
T  2948639 aaatggtccacacaaccagatcttgtgtttgatagtcgatgtgtatctactgc 2948587  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 629
Target Start/End: Original strand, 2011768 - 2011870
Alignment:
Q  527 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctc 626  Q
    ||||||||||||| |  | |||||||||| ||||||| || ||||||||| ||||| ||  |||| ||||||||||||||||||||   |||||||| ||    
T  2011768 tgccaattagggatgttgtgagaacaagtattttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtc 2011867  T
Q  627 tgc 629  Q
    |||    
T  2011868 tgc 2011870  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 623
Target Start/End: Original strand, 3340267 - 3340410
Alignment:
Q  480 aattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaac 579  Q
    ||||||||||||||| |||||| | ||||| | ||||||  |  || || |||||| ||||||||  ||||||||||||||||| |  || ||||| ||     
T  3340267 aattagttgcttaccagatcatcttatagagctgattctctcacacttgtcaattaaggaagcagtaagaacaagtgttttatcgagcaattggagaaag 3340366  T
Q  580 aaagggtacacactaccaaatcttgtgtttgatagtcaatgtgt 623  Q
    ||| ||| |||  ||||| |||||||||||||| || |||||||    
T  3340367 aaatggtccactttaccagatcttgtgtttgatcgtgaatgtgt 3340410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 629
Target Start/End: Original strand, 2019577 - 2019679
Alignment:
Q  527 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaatggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctc 626  Q
    |||| |||||||| || | |||||||||||||||||| || ||||||||| ||||| ||  |||| | ||||||||||| ||| |||  ||| |||||||    
T  2019577 tgcctattagggacgctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaacgtgtctc 2019676  T
Q  627 tgc 629  Q
    |||    
T  2019677 tgc 2019679  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 4335399 - 4335353
Alignment:
Q  364 tatacactaacctagtttgttttctgattcgtgtatgtacctttgtt 410  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  4335399 tatactctaacctagtttgttgtctgattcatgtatgtacctttgtt 4335353  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 474 - 628
Target Start/End: Original strand, 21237288 - 21237442
Alignment:
Q  474 ggatagaattagttgcttacctgatcatgtaatagatcagattctaacttaca--tgccaattagggaagcagcgagaacaagtgttttatctaaaaaat 571  Q
    |||||| ||||||| |||||| | | |||||| ||| ||||||||  ||||||  ||||||||| |||||||  |||||||||||| ||||| |  ||||    
T  21237288 ggataggattagttccttaccaggtaatgtaacagaccagattct--cttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaat 21237385  T
Q  572 ggaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgtctctg 628  Q
    |||| |||||| |||||||  | |||||||||||||| ||||  || ||||||||||    
T  21237386 ggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctg 21237442  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 623
Target Start/End: Original strand, 17969613 - 17969763
Alignment:
Q  473 cggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacatgccaattagggaagcagcgagaacaagtgttttatctaaaaaatg 572  Q
    ||||||| |||||||||||||| |||||| ||  | |||| |||||  | ||  || |||| | |||||||| |||||||||||||||||| |  |||||    
T  17969613 cggataggattagttgcttacccgatcatctacaacatcatattctctcatatttgacaatcaaggaagcagggagaacaagtgttttatcgagcaaatg 17969712  T
Q  573 gaggaacaaagggtacacactaccaaatcttgtgtttgatagtcaatgtgt 623  Q
    || ||| ||| |||  || | |||| |||||||||||||||| ||||||||    
T  17969713 gaagaagaaatggtctacccaaccagatcttgtgtttgatagacaatgtgt 17969763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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