View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_high_4 (Length: 529)
Name: NF20882_high_4
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_high_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 32 - 513
Target Start/End: Original strand, 28608827 - 28609308
Alignment:
| Q |
32 |
ttcaaagatatcaacttgaatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgta |
131 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608827 |
ttcaaagatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgta |
28608926 |
T |
|
| Q |
132 |
tttgtatgatctttgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608927 |
tttgtatgatctttgttggaggtcctgatgatcgcgaagcattatctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggat |
28609026 |
T |
|
| Q |
232 |
gctcttgtttggtaaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaatta |
331 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
28609027 |
gctcctgtttggtaaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctattgtaatggatagtgagaagcaaaaggaatta |
28609126 |
T |
|
| Q |
332 |
gatgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccattctgctgaagatattccca |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609127 |
gatgatgagtatgttaatggatttagattgacaacgatgaacaacaatgattctatatcttattcagaagttgatgtccattctgctgaagatattccca |
28609226 |
T |
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| Q |
432 |
catccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacagggaaatcgtaggaacactcgagtcttttt |
513 |
Q |
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| T |
28609227 |
catccctcaatgagatagaaaaaattggttgcgatttatacatagttggacagggaaatcgtaggaacactcgagtcttttt |
28609308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 34 - 513
Target Start/End: Complemental strand, 438075 - 437596
Alignment:
| Q |
34 |
caaagatatcaacttgaatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgtatt |
133 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| || ||| |||||||||| ||||||| | |||||||||||| |
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| T |
438075 |
caaagatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgtggaccgtgatcttgggtcattaccaactttaaattttcgtatt |
437976 |
T |
|
| Q |
134 |
tgtatgatctttgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgc |
233 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||| |||||| | ||||||||||| | |||||||||||||| |
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| T |
437975 |
tgtatgatctttgttggtggtcctgatgatcgcgaagccttagctgttgcatggagaatggcaggacgcataggaacccaattatcagtggttcggatgc |
437876 |
T |
|
| Q |
234 |
tcttgtttggtaaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattaga |
333 |
Q |
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|| |||||| ||| |||| |||||| |||||| ||||||||| | || || || ||| ||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
437875 |
tcctgtttgataatgctgaaatagtagacacctcaagtcatgctgaaccacaagggatactatctattgtaatggatagtgagaagcagaaggagttaga |
437776 |
T |
|
| Q |
334 |
tgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccaca |
433 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |
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| T |
437775 |
tgatgagtatgtgaatggatttagattgacagcgatgaacaacaatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccaca |
437676 |
T |
|
| Q |
434 |
tccctcaatgagatagaaaaaattggttgcgatttatacgtagttggacagggaaatcgtaggaacactcgagtcttttt |
513 |
Q |
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|||||||||| ||||||| || |||| ||||||| |||||||||| || ||||||||||||| ||| |||||||| |
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| T |
437675 |
accctcaatgaactagaaaatttttattgcaatttatatatagttggacaagggaatcgtaggaacaatcgtgtcttttt |
437596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 34 - 483
Target Start/End: Original strand, 13660200 - 13660649
Alignment:
| Q |
34 |
caaagatatcaacttgaatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgtatt |
133 |
Q |
| |
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||||||||| ||| |||||||||||||| | |||||||||| |||||| | ||||||||||||||||||||||| || |||||||||| ||||| ||| |
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| T |
13660200 |
caaagatataaaccagaatgtgatgcaaacttcaccttgctctgtgggaatctttgttgatcgtaatcttgggtcaataacaaaaatgaactttcgaatt |
13660299 |
T |
|
| Q |
134 |
tgtatgatctttgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgc |
233 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||| || ||| |||||||| | | | |||||||||||| |
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| T |
13660300 |
tgtatgatctttattggaggtcctgatgatcatgaagccttagctgttgcatggaggatggtggggcacccaggaacccgattatcattggttcggatgc |
13660399 |
T |
|
| Q |
234 |
tcttgtttggtaaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattaga |
333 |
Q |
| |
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||||||||| |||| || ||| | | | ||||||| || ||| | |||||||||||| | |||||||||| |||||| || ||||| |||| |
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| T |
13660400 |
tcttgtttgacgaagcagccgaagtaaatattataagtcattatgaagtacaaggcatattatctgttgtaatggataatgagaagcagaaggatctaga |
13660499 |
T |
|
| Q |
334 |
tgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccaca |
433 |
Q |
| |
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|| || ||||| ||| ||||||| ||| | | |||| | ||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| |
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| T |
13660500 |
cgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattctatatcatattcggaggttgatgtccattcaagtgaagatattcccaca |
13660599 |
T |
|
| Q |
434 |
tccctcaatgagatagaaaaaattggttgcgatttatacgtagttggaca |
483 |
Q |
| |
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||||||||| |||| ||| |||||| ||||||||| |||||||||| |
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| T |
13660600 |
atcctcaatgatttagacaaatttggttatgatttatacatagttggaca |
13660649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 34 - 483
Target Start/End: Original strand, 13652700 - 13653149
Alignment:
| Q |
34 |
caaagatatcaacttgaatgtgatgcaaagtgcaccttgctcggtgggattatttgttgatcgtaatcttgggtccttaccaaaaatgaattttcgtatt |
133 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||| | ||||| |||||||| ||||| ||| |
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| T |
13652700 |
caaagatataaacctgaatgtgatgcaaactgcaccttgctctgtgggaatctttgttgatcgtaatcttgggacattaccgaaaatgaactttcgaatt |
13652799 |
T |
|
| Q |
134 |
tgtatgatctttgttggaggtcctgatgatcgcgaagcattagctgtcgcatggaggatgacaggacacttaggaacccaacttctagtggttcggatgc |
233 |
Q |
| |
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|||||||| |||||||| || |||||||| | ||||| ||| |||| |||||||||||| | | ||| | |||| | | | ||||||||| |||| |
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| T |
13652800 |
tgtatgatatttgttggtggccctgatgaccatgaagccttaactgttgcatggaggatggcggagcacccaagaactcgattatcagtggttcgaatgc |
13652899 |
T |
|
| Q |
234 |
tcttgtttggtaaagctgcaatagtggacaccacaagtcatgataaagcaaggggcatattatctatggtaatggatagtgagaaacaaaaggaattaga |
333 |
Q |
| |
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|| |||| | | |||||| ||| ||||| | ||||||| || || || || |||||||| | |||||||||| |||||| || ||||| |||| |
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|
| T |
13652900 |
tcctgttagatgtagctgctgaagtagacactaaaagtcataatgaaacacaaggagtattatctgttgtaatggataatgagaagcagaaggatctaga |
13652999 |
T |
|
| Q |
334 |
tgatgagtatgttaatggatttagattgacaacgatgaacagcaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccaca |
433 |
Q |
| |
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|| || ||||| ||| ||||||| ||| | | |||| | |||||||| |||||| |||||||| |||||||||||||| | |||||||||||||||| |
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| T |
13653000 |
cgaagaatatgtaaattcatttagactgaaagcagtgaataacaatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccaca |
13653099 |
T |
|
| Q |
434 |
tccctcaatgagatagaaaaaattggttgcgatttatacgtagttggaca |
483 |
Q |
| |
|
||| |||| |||| ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
13653100 |
atccttgatgatttagacaaatttggttgtgatttatacatagttggaca |
13653149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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