View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_high_7 (Length: 410)
Name: NF20882_high_7
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 30501686 - 30501946
Alignment:
| Q |
4 |
ataatactacaaatcaacttcatttttgagaggacaaatcaactttctttattcaactaatgtagtcaaatgaattatgtatatgtagagacggagttag |
103 |
Q |
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| T |
30501686 |
ataatactacaaatcaacttcatttttgagaggacaaatcaactttctttattcaactaatgtagtcaaatgaattatgtatatgtagagacggagttag |
30501785 |
T |
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| Q |
104 |
ta----------------------cactagtaggtagagtgagatttgaaatgtctctaatatggatggcataacctaactgaattgaaaacgataatta |
181 |
Q |
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| T |
30501786 |
tataccattcattcaatggacattcactagtaggtagagtgagatttgaaatgtctctaatatggatggcataacctaactgaattgaaaacgataatta |
30501885 |
T |
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| Q |
182 |
atgttataactattacttgaaagtcttggtaaaccaaggagatgaattacctatgatcggt |
242 |
Q |
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| T |
30501886 |
atgttataactattacttgaaagtcttggtaaaccaaggagatgaattacctatgatcggt |
30501946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 30502018 - 30502098
Alignment:
| Q |
315 |
ctttagtgacaggaattattaattacattgtctgccattagtttttcctttatttcgtcatttctcttcaagtgaagtgac |
395 |
Q |
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| T |
30502018 |
ctttagtgacaggaattattaattacattgtctgccattagtttttcctttatttcgtcatttctcttcaagtgaagtgac |
30502098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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