View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20882_low_1 (Length: 684)

Name: NF20882_low_1
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20882_low_1
NF20882_low_1
[»] chr1 (4 HSPs)
chr1 (17-665)||(21154533-21155181)
chr1 (598-665)||(21160632-21160699)
chr1 (435-473)||(21160430-21160468)
chr1 (506-564)||(21160479-21160537)
[»] chr6 (2 HSPs)
chr6 (104-377)||(3071730-3071997)
chr6 (389-445)||(3073468-3073524)
[»] chr4 (4 HSPs)
chr4 (561-665)||(27731670-27731774)
chr4 (565-665)||(27738709-27738809)
chr4 (389-564)||(27738465-27738638)
chr4 (389-487)||(27731445-27731543)
[»] chr3 (2 HSPs)
chr3 (390-473)||(21250003-21250086)
chr3 (561-665)||(21249777-21249881)


Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 17 - 665
Target Start/End: Original strand, 21154533 - 21155181
Alignment:
Q  17 aatatggtaaaaagtttaagtttatccatcaaagactcgtctctaaattgagtcaagttattcaaactcccaaacagttttatagattaacatgatttta 116  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21154533 aatatggtaacaggtttaagtttatccatcaaagactcgtctctaaattgagtcaagttattcaaactcccaaacagttttatagattaacatgatttta 21154632  T
Q  117 ttttactttggtttcagaaatttaagtggaaagccttgtctcaccgaaatcatgtaagagaattgaacaacaactgaatatagatgcaagcacatagtct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21154633 ttttactttggtttcagaaatttaagtggaaagccttgtctcaccgaaatcatgtaagagaattgaacaacaactgaatatagatgcaagcacatagtct 21154732  T
Q  217 catcaatggtttaaaattaaatgagttaaaaagatcaatggttcaatttagtcaaaaaactcggtacctagagttttctgaaactcataacagtatattc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21154733 catcaatggtttaaaattaaatgagttaaaaagatcaatggttcaatttagtcaaaaaactcggtacctagagttttctgaaactcataacagtatattc 21154832  T
Q  317 atgagaaataaataatcttaatcttcaataatgaagtccttgacaggcaaaattccagtaataaattccttaagcacaataatagatcttcaatcgtaaa 416  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21154833 atgagaaatacataatcttaatcttcaataatgaagtccttgacaggcaaaattccagtaataaattccttaagcacaataatagatcttcaatcgtaaa 21154932  T
Q  417 tagaaaactacaaaacttccaattatcatgttaataagttcaaatgatattcaaacaatagacaccaatatag-gnnnnnnnncttaaatagtaagcttt 515  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||          |||||||||||||||||    
T  21154933 tagaaaactacaaaacttccaattatcatgttaataagtttaaatgatattcaaacaatagacaccaatatagaaaaaaaaaacttaaatagtaagcttt 21155032  T
Q  516 gcatatatagagaaaatgaagagtacatccaactcattcaattgctttacatctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21155033 gcatatatagagaaaatgaagagtacatccaactcattcaattgctttacatctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttg 21155132  T
Q  616 cataaaccaatgagtttaaatgacctaaataagacaatgaaagaccaatt 665  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21155133 cataaaccaatgagtttaaatgacctaaataagacaatg-aagaccaatt 21155181  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 598 - 665
Target Start/End: Original strand, 21160632 - 21160699
Alignment:
Q  598 aacaaatcatttcctttgcataaaccaatgagtttaaatgacctaaataagacaatgaaagaccaatt 665  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||    
T  21160632 aacaaatcatttcctttgcataaaacaatgagttcaaatgacctaaccaagacaatgaaagaccaatt 21160699  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 21160430 - 21160468
Alignment:
Q  435 ccaattatcatgttaataagttcaaatgatattcaaaca 473  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21160430 ccaattatcatgttaatcagttcaaatgatattcaaaca 21160468  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 564
Target Start/End: Original strand, 21160479 - 21160537
Alignment:
Q  506 agtaagctttgcatatatagagaaaatgaagagtacatccaactcattcaattgcttta 564  Q
    |||||||| ||||| |||| ||||||  || || |||||||||||||||||||||||||    
T  21160479 agtaagctatgcatctatatagaaaagaaaaaggacatccaactcattcaattgcttta 21160537  T

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Target: chr6 (Bit Score: 175; Significance: 7e-94; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 104 - 377
Target Start/End: Original strand, 3071730 - 3071997
Alignment:
Q  104 taacatgattttattttactttggtttcagaaatttaagtggaaagccttgtctcaccgaaatcatgtaagagaattgaacaacaactgaatatagatgc 203  Q
    ||||||||||||||||||| || |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  3071730 taacatgattttattttaccttagtttcaaaaatttaagttgaaagccttgtctcactgaaatcatgtaagagaattgaacaacaactgaatataaatgc 3071829  T
Q  204 aagcacatagtctcatcaatggtttaaaattaaatgagttaaaaagatcaatggttcaatttagtcaaaaaactcggtacctagagttttctgaaactca 303  Q
    ||| ||||||||||||| ||||| ||||      |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  3071830 aagtacatagtctcatcgatggtgtaaa------tgagttaaaaagatcaatggttcaatttagtcaaaaaattcggtacgtagagttttctgaaactca 3071923  T
Q  304 taacagtatattcatgagaaataaataatcttaatcttcaataatgaagtccttgacaggcaaaattccagtaa 377  Q
    |||||||||| |||||||||||| |||||||||||||||||||||  | |  |||||| |||||||||||||||    
T  3071924 taacagtataatcatgagaaatacataatcttaatcttcaataatatattaattgacaagcaaaattccagtaa 3071997  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 3073468 - 3073524
Alignment:
Q  389 agcacaataatagatcttcaatcgtaaatagaaaactacaaaacttccaattatcat 445  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  3073468 agcacaataatagatcttcaattgcaaatagaaaactacaaaacttccaattatcat 3073524  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 561 - 665
Target Start/End: Original strand, 27731670 - 27731774
Alignment:
Q  561 tttacatctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttgcataaaccaatgagtttaaatgacctaaataagacaatgaaagac 660  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||| |||||||||    
T  27731670 tttacatctgtgaacacattcagaatatcaatggaaaaacaaatcattttctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagac 27731769  T
Q  661 caatt 665  Q
     ||||    
T  27731770 taatt 27731774  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 565 - 665
Target Start/End: Original strand, 27738709 - 27738809
Alignment:
Q  565 catctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttgcataaaccaatgagtttaaatgacctaaataagacaatgaaagaccaat 664  Q
    |||||||||||| |||| |||||| ||||||||||||||||||| | |||||||| | ||||||||| ||||||||||||||||||||||||||||||||    
T  27738709 catctgtgaacacattcagaatatcaatggaaaaacaaatcattacatttgcatagaacaatgagttcaaatgacctaaataagacaatgaaagaccaat 27738808  T
Q  665 t 665  Q
    |    
T  27738809 t 27738809  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 389 - 564
Target Start/End: Original strand, 27738465 - 27738638
Alignment:
Q  389 agcacaataatagatcttcaatcgtaaatagaaaactacaaaacttccaattatcatgttaataagttcaaatgatattcaaacaatagacaccaatata 488  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||| ||| || |||||||||||||||||| ||  ||||||||||    
T  27738465 agcacaataatagatctttaattgtaaatagaaaactacaaaactttcgattatcatgtgaatcagctcaaatgatattcaaacactaagcaccaatata 27738564  T
Q  489 ggnnnnnnnncttaaatagtaagctttgcatatatagagaaaatgaagagtacatccaactcattcaattgcttta 564  Q
    |         |||||| |||||| | ||||| |||| ||||||  || || |||| ||||||||||||||||||||    
T  27738565 g--agaaaaacttaaacagtaagatatgcatgtatatagaaaagaaaaaggacattcaactcattcaattgcttta 27738638  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 389 - 487
Target Start/End: Original strand, 27731445 - 27731543
Alignment:
Q  389 agcacaataatagatcttcaatcgtaaatagaaaactacaaaacttccaattatcatgttaataagttcaaatgatattcaaacaatagacaccaatat 487  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||  |||||||||    
T  27731445 agcacaatattagatcttgaattgtaaatagaaaactacaaaacttccaattatcatgttaatcggttcaaatgatatttaaacactaatcaccaatat 27731543  T

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Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 21250086 - 21250003
Alignment:
Q  390 gcacaataatagatcttcaatcgtaaatagaaaactacaaaacttccaattatcatgttaataagttcaaatgatattcaaaca 473  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||  |||||||||||||||||||||    
T  21250086 gcacaataatagatcttcaattgtaaatagaaaactataaaacttccaattatcacgttaaacagttcaaatgatattcaaaca 21250003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 561 - 665
Target Start/End: Complemental strand, 21249881 - 21249777
Alignment:
Q  561 tttacatctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttgcataaaccaatgagtttaaatgacctaaataagacaatgaaagac 660  Q
    ||||||| |||||||| |||| | |||| ||||||||||||||||||||||||| || | | |||| |||| ||||||||||||||| ||||||||| ||    
T  21249881 tttacatttgtgaacacattcaggatatcaatggaaaaacaaatcatttcctttacaaagaacaattagttcaaatgacctaaataatacaatgaaaaac 21249782  T
Q  661 caatt 665  Q
    |||||    
T  21249781 caatt 21249777  T

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