View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_11 (Length: 340)
Name: NF20882_low_11
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 12064596 - 12064300
Alignment:
| Q |
1 |
agcatcaccaaccatgtcttgatcatagattccgcctctaagaagaaaatctaacgaagctagtgaatccagaataaccaaccaagaacaagacgaagac |
100 |
Q |
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| T |
12064596 |
agcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaatataatgaagctagtgaatccagaataaccaaccaagaacaagacgaagac |
12064497 |
T |
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| Q |
101 |
ataactcataagtattaatgatggaccatacaaataattggttttttggcaagttacattacattattatctataatataatctttttcataataattat |
200 |
Q |
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| T |
12064496 |
ataactcataagtattaatgatggaccatacaaataattggttttttggcaagttacattacattattatctataatataatctttttcataataattat |
12064397 |
T |
|
| Q |
201 |
cctgagatagagtgctaacaagctaatatgaaatcgaaaaagaaaatgatcaaggttatg-tttctaaagaaatttttgactttttaaaccatccaac |
297 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||| |||||| |
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| T |
12064396 |
cctgagatagagtgctaacaagctaatatgaaatcaaaaaagaaaatgatcaaggttatgatgtctaaagaaatttttgac-ttttaaaccgtccaac |
12064300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 12059144 - 12058847
Alignment:
| Q |
1 |
agcatcaccaaccatgtcttgatcatagattccgcctctaagaagaaaatctaacgaagctagtgaatccagaataaccaaccaagaacaagacgaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
12059144 |
agcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaatataatgaaactagtgaatccagaataaccaaccaagaacaagatgaagac |
12059045 |
T |
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| Q |
101 |
ataactcataagtattaatgatggaccatacaaataattggttttttggcaagttacattacattattatctataatataa-tctttttcataataatta |
199 |
Q |
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| T |
12059044 |
ataactcatgagtattaatgatggaccacacgaataattggttttttggtaagttacattacattattatctataatataattttttttcataataatta |
12058945 |
T |
|
| Q |
200 |
tcctgagatagagtgctaacaagctaatatgaaatcgaaaaagaaaatgatcaaggttat-gtttctaaagaaatttttgactttttaaaccatccaac |
297 |
Q |
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| T |
12058944 |
tcttgagatagagtgctaacaagctaatttgaatatgaaaca-aaaatgatgaaggttataatgtttaaagattttttttactttttaaaccgtccaac |
12058847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 12051712 - 12051442
Alignment:
| Q |
1 |
agcatcaccaaccatgtcttgatcatagattccgcctctaagaagaaaatctaacgaagctagtgaatccagaataaccaaccaagaacaagacgaagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
12051712 |
agcatcaccaaccatgtcttgatcatagattccgtctctaagaagaaaatctaatgaagctggtgaatccagaataaccaaccaagaacaagatgaaga- |
12051614 |
T |
|
| Q |
101 |
ataactcataagtattaatgatggaccatacaaataattggttttttggcaagttacattacattattatctataatataatctttttcataataattat |
200 |
Q |
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| T |
12051613 |
------cataagtagtaatgatggactacacgaataattgattttttggcaagttatattacattattat-----acataatctattacataataattat |
12051525 |
T |
|
| Q |
201 |
cctgagatagagtgctaacaagctaatatgaaatcgaaaaagaaaatgatcaaggttatgtttctaaagaaatttttgactttttaaacca |
291 |
Q |
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| T |
12051524 |
attgagagagagtgctaacaagctaatttgaaaac-aaaaagaaaatgatcaaggtt-------taaagaaattttttactttttaaacca |
12051442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 297
Target Start/End: Complemental strand, 12047347 - 12047224
Alignment:
| Q |
174 |
taatataatctttttcataataattatcctgagatagagtgctaacaagctaatatgaaatcgaaaaagaaaatgatcaaggttatg-tttctaaagaaa |
272 |
Q |
| |
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|||| |||||| |||| ||||| |||| |||||||||| |||||||||||||| ||||| | ||| ||||||| |||||||||||| | |||||||||| |
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| T |
12047347 |
taatttaatctacttcaaaataaatatcttgagatagagagctaacaagctaatttgaaaacaaaacagaaaataatcaaggttatgatgtctaaagaaa |
12047248 |
T |
|
| Q |
273 |
tttttgactttttaaaccatccaac |
297 |
Q |
| |
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|||||||| ||||||||| |||||| |
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| T |
12047247 |
tttttgac-ttttaaaccgtccaac |
12047224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 5573652 - 5573719
Alignment:
| Q |
6 |
caccaaccatgtcttgatcatagattccgcctctaagaagaaaatctaacgaagctagtgaatccaga |
73 |
Q |
| |
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| T |
5573652 |
caccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagctacagaatccaga |
5573719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 5582927 - 5582994
Alignment:
| Q |
6 |
caccaaccatgtcttgatcatagattccgcctctaagaagaaaatctaacgaagctagtgaatccaga |
73 |
Q |
| |
|
||||||||||||||| || ||||| ||| ||||||||||||||||||| ||||||| | |||||||| |
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| T |
5582927 |
caccaaccatgtctttattatagaatccatctctaagaagaaaatctaatgaagctaataaatccaga |
5582994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 12047420 - 12047371
Alignment:
| Q |
41 |
agaagaaaatctaacgaagctagtgaatccagaataaccaaccaagaaca |
90 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| |||||||||| |
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| T |
12047420 |
agaagaaaatctaaagaagctagtgaatccagaaatacccaccaagaaca |
12047371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 5593419 - 5593468
Alignment:
| Q |
6 |
caccaaccatgtcttgatcatagattccgcctctaagaagaaaatctaac |
55 |
Q |
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||||||||||| ||| |||||||||||| ||||||||||||||| |||| |
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| T |
5593419 |
caccaaccatggctttatcatagattccatctctaagaagaaaatataac |
5593468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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