View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_12 (Length: 310)
Name: NF20882_low_12
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 27568629 - 27568900
Alignment:
| Q |
15 |
atgaacaaatcaatccttaaaaggcttggtcaattcttaccttttaactaactttagggtttatgttaggcctaaccaaattctattaggaataactaac |
114 |
Q |
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| T |
27568629 |
atgaacaaatcaatccttaaaaggcttggtcaattcttaccttgtaactaactttagggtttaagttaggcctaaccaaattctaaaaggaataactaac |
27568728 |
T |
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| Q |
115 |
ataacataatttaacaagtcaagctatcaagattaaagaatccataatgtgcaattgaaaatttaacttaattttccataagttaccgcattatcatgca |
214 |
Q |
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| T |
27568729 |
ataacataatttaacaagtcaagctatgaacattcaagaatccataattcgcaattgaaaatttaacttaactttccataag--------ttatcatgca |
27568820 |
T |
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| Q |
215 |
atatatgttgcaattataagtaattctactaaatattattttctggaatggggaaag-aaaaaagccaggtagcatatat |
293 |
Q |
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| T |
27568821 |
atatatgttgcaattataagtaattctactaaatattattttctggaatggggaaagaaaaaaagccaggtagcatatat |
27568900 |
T |
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