View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20882_low_13 (Length: 305)

Name: NF20882_low_13
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20882_low_13
NF20882_low_13
[»] chr7 (30 HSPs)
chr7 (19-131)||(1786385-1786497)
chr7 (233-305)||(1786599-1786671)
chr7 (233-305)||(8916478-8916550)
chr7 (54-123)||(4303153-4303222)
chr7 (54-131)||(11001090-11001167)
chr7 (236-305)||(1690232-1690301)
chr7 (233-305)||(24840059-24840131)
chr7 (233-305)||(1369721-1369793)
chr7 (233-297)||(4133398-4133462)
chr7 (233-305)||(11000927-11000999)
chr7 (233-305)||(11228897-11228969)
chr7 (233-304)||(5934520-5934591)
chr7 (235-302)||(6451854-6451921)
chr7 (53-131)||(8915437-8915515)
chr7 (236-304)||(8063898-8063966)
chr7 (233-305)||(27142582-27142654)
chr7 (233-305)||(2767844-2767919)
chr7 (233-304)||(4955966-4956037)
chr7 (56-123)||(13883007-13883073)
chr7 (236-302)||(35814790-35814856)
chr7 (233-302)||(11228636-11228705)
chr7 (56-123)||(1217484-1217550)
chr7 (252-302)||(1365606-1365657)
chr7 (233-293)||(3778827-3778889)
chr7 (236-302)||(19404213-19404280)
chr7 (54-108)||(1369560-1369614)
chr7 (237-296)||(8915279-8915338)
chr7 (259-302)||(27309719-27309762)
chr7 (57-131)||(11228469-11228542)
chr7 (267-305)||(18790273-18790311)
[»] chr8 (23 HSPs)
chr8 (233-305)||(30440653-30440725)
chr8 (235-305)||(24577629-24577699)
chr8 (58-131)||(22922166-22922239)
chr8 (233-305)||(14130081-14130153)
chr8 (233-305)||(16598082-16598154)
chr8 (233-304)||(24578879-24578950)
chr8 (54-124)||(23573280-23573350)
chr8 (62-131)||(26377776-26377845)
chr8 (60-123)||(22512372-22512435)
chr8 (233-305)||(26374814-26374888)
chr8 (235-302)||(24730948-24731017)
chr8 (233-302)||(10629222-10629291)
chr8 (253-302)||(16598184-16598233)
chr8 (259-304)||(26377973-26378018)
chr8 (236-304)||(30442445-30442514)
chr8 (233-298)||(31072235-31072300)
chr8 (67-131)||(2688928-2688992)
chr8 (235-305)||(20693718-20693787)
chr8 (61-128)||(24577796-24577864)
chr8 (262-304)||(2687687-2687729)
chr8 (71-131)||(2188723-2188783)
chr8 (261-305)||(2609596-2609640)
chr8 (233-305)||(28263867-28263937)
[»] chr4 (22 HSPs)
chr4 (233-305)||(7633996-7634068)
chr4 (242-305)||(13991480-13991543)
chr4 (54-112)||(22716358-22716416)
chr4 (54-112)||(22988801-22988859)
chr4 (233-297)||(17255007-17255071)
chr4 (58-121)||(13085420-13085483)
chr4 (54-124)||(6659652-6659721)
chr4 (233-302)||(21433667-21433735)
chr4 (262-305)||(10494848-10494891)
chr4 (233-302)||(3765311-3765380)
chr4 (54-131)||(10494668-10494745)
chr4 (260-305)||(13990778-13990823)
chr4 (53-128)||(7635033-7635108)
chr4 (57-112)||(9260312-9260367)
chr4 (236-305)||(40206067-40206137)
chr4 (236-285)||(18689672-18689721)
chr4 (235-304)||(38888092-38888161)
chr4 (237-296)||(7635210-7635269)
chr4 (258-305)||(9260514-9260561)
chr4 (260-302)||(28897913-28897955)
chr4 (236-285)||(18657193-18657242)
chr4 (268-305)||(18689622-18689659)
[»] chr1 (25 HSPs)
chr1 (235-305)||(10927112-10927182)
chr1 (236-302)||(10925659-10925725)
chr1 (54-131)||(23988969-23989046)
chr1 (56-131)||(10927850-10927925)
chr1 (54-123)||(8966024-8966093)
chr1 (233-304)||(9199317-9199389)
chr1 (57-117)||(10926943-10927003)
chr1 (233-303)||(239603-239673)
chr1 (233-305)||(12944032-12944104)
chr1 (233-302)||(28660851-28660918)
chr1 (233-302)||(9195046-9195115)
chr1 (54-131)||(31522578-31522655)
chr1 (233-305)||(31915465-31915538)
chr1 (71-128)||(40805620-40805677)
chr1 (236-302)||(9030936-9031002)
chr1 (233-305)||(23987486-23987560)
chr1 (262-305)||(50713658-50713701)
chr1 (54-123)||(13441913-13441980)
chr1 (233-305)||(43681373-43681449)
chr1 (259-305)||(8221430-8221476)
chr1 (236-302)||(21903671-21903737)
chr1 (236-297)||(40804549-40804608)
chr1 (236-285)||(36694679-36694728)
chr1 (236-285)||(36710780-36710829)
chr1 (234-298)||(28661175-28661238)
[»] scaffold0110 (1 HSPs)
scaffold0110 (58-131)||(45932-46005)
[»] chr6 (27 HSPs)
chr6 (58-131)||(3541947-3542020)
chr6 (58-131)||(30049617-30049690)
chr6 (58-131)||(30051904-30051977)
chr6 (233-304)||(14216810-14216882)
chr6 (56-124)||(18203183-18203250)
chr6 (233-305)||(34373887-34373959)
chr6 (56-131)||(34374051-34374126)
chr6 (60-123)||(32361109-32361172)
chr6 (235-305)||(24443172-24443242)
chr6 (54-131)||(22888999-22889076)
chr6 (54-131)||(22910542-22910619)
chr6 (67-131)||(12881781-12881845)
chr6 (233-304)||(32361284-32361356)
chr6 (54-128)||(22873556-22873630)
chr6 (233-305)||(18727946-18728019)
chr6 (236-302)||(11658850-11658917)
chr6 (233-302)||(1127170-1127239)
chr6 (233-305)||(12778500-12778573)
chr6 (233-282)||(8047489-8047539)
chr6 (61-123)||(12778681-12778743)
chr6 (233-280)||(8049994-8050042)
chr6 (262-305)||(12882067-12882111)
chr6 (93-131)||(11194401-11194439)
chr6 (59-109)||(18720019-18720069)
chr6 (51-112)||(8047663-8047724)
chr6 (261-305)||(27822219-27822264)
chr6 (236-302)||(33615608-33615678)
[»] chr2 (25 HSPs)
chr2 (58-131)||(2165624-2165697)
chr2 (54-123)||(27952649-27952718)
chr2 (233-304)||(5171687-5171758)
chr2 (54-130)||(280279-280355)
chr2 (54-131)||(35681950-35682027)
chr2 (56-123)||(31636033-31636100)
chr2 (233-304)||(33051534-33051605)
chr2 (233-302)||(32163875-32163944)
chr2 (54-131)||(33053165-33053241)
chr2 (57-123)||(22011131-22011197)
chr2 (236-302)||(23457563-23457631)
chr2 (236-304)||(1218389-1218457)
chr2 (262-305)||(28737782-28737825)
chr2 (54-129)||(32162233-32162308)
chr2 (233-294)||(1518106-1518167)
chr2 (233-305)||(33053333-33053405)
chr2 (236-302)||(21772293-21772360)
chr2 (259-304)||(4184870-4184916)
chr2 (81-131)||(36648646-36648696)
chr2 (62-124)||(23457389-23457451)
chr2 (235-305)||(32162070-32162141)
chr2 (238-294)||(36615127-36615185)
chr2 (81-131)||(36614867-36614917)
chr2 (244-294)||(36648890-36648942)
chr2 (259-302)||(12966418-12966462)
[»] chr3 (10 HSPs)
chr3 (233-305)||(8536474-8536546)
chr3 (54-119)||(365879-365944)
chr3 (59-125)||(8536653-8536719)
chr3 (240-305)||(1320150-1320215)
chr3 (70-123)||(3064063-3064116)
chr3 (233-302)||(365697-365766)
chr3 (233-289)||(20400732-20400788)
chr3 (59-104)||(2473000-2473045)
chr3 (265-305)||(2107954-2107994)
chr3 (261-305)||(52708798-52708842)
[»] scaffold0240 (3 HSPs)
scaffold0240 (233-294)||(1573-1634)
scaffold0240 (237-305)||(15967-16035)
scaffold0240 (233-285)||(15902-15954)
[»] scaffold0330 (1 HSPs)
scaffold0330 (233-294)||(17555-17616)
[»] scaffold0054 (5 HSPs)
scaffold0054 (54-131)||(10395-10472)
scaffold0054 (59-125)||(49063-49129)
scaffold0054 (237-295)||(49242-49300)
scaffold0054 (233-305)||(37628-37700)
scaffold0054 (80-118)||(37485-37523)
[»] chr5 (5 HSPs)
chr5 (54-131)||(18252164-18252241)
chr5 (54-131)||(21845206-21845283)
chr5 (241-304)||(18252340-18252403)
chr5 (58-113)||(19677629-19677684)
chr5 (274-302)||(26140300-26140328)
[»] scaffold0251 (1 HSPs)
scaffold0251 (233-305)||(9619-9690)
[»] scaffold0024 (3 HSPs)
scaffold0024 (233-287)||(145649-145703)
scaffold0024 (238-301)||(144022-144085)
scaffold0024 (56-123)||(145481-145547)
[»] scaffold0090 (1 HSPs)
scaffold0090 (233-305)||(15165-15236)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 1786385 - 1786497
Alignment:
Q  19 ggtatccgggtggcctcttgttcattgaaggagagagctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||     
T  1786385 ggtatccgggtggcctcttgttcattgaaggagagagctctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaa 1786484  T
Q  119 ggtttccttagta 131  Q
    ||||| |||||||    
T  1786485 ggttttcttagta 1786497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 1786599 - 1786671
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1786599 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttcgcaatttctg 1786671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 8916550 - 8916478
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8916550 agcttaacagttgtaacataagaggaaacttttattcattcaataatattttagagagttttctcaatttctg 8916478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 4303153 - 4303222
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||    
T  4303153 agctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggttt 4303222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 11001167 - 11001090
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||| |||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11001167 agctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggagggtttccttagta 11001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 1690301 - 1690232
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  1690301 ttaacagttgtagcctaagagacaacttttattcattaaatactattttagagaattttctcaatttctg 1690232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 24840059 - 24840131
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||  ||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  24840059 agcttaaccattgtagcctaagaggcaacttttatttattgaataatattttagagagttttctcaatttctg 24840131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 1369721 - 1369793
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||| ||||||||||||||||  |||||||||| ||| |||||||||||| |||||||||||||||||||    
T  1369721 agcttaatagttgtagcctaagagacaacttttattaattcaataatattttatagagttttctcaatttctg 1369793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 4133462 - 4133398
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctc 297  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  4133462 agcttaaaagttgtagcctaagaggcaacttatattcattcaataatattttagagagttttctc 4133398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 11000999 - 11000927
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||||| ||||||| || | ||||||||| |||||||||||||||||||||| |||||||||    
T  11000999 agcttaacagttgtagcttaagaggcaattattattcattcaataatattttagagagttttcccaatttctg 11000927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 11228897 - 11228969
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| ||||||| ||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||    
T  11228897 agcttaacatttgtagcataagaggcaacttttattcactcaataatattttagagagttttatcaatttctg 11228969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 5934520 - 5934591
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||||| |||||||||||||| | || ||||||||||| |||||||||||||||| ||||||||||||||    
T  5934520 agcttaacggttgtagcctaagaagcaatttttattcattcaataatattttagagaattttctcaatttct 5934591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 6451921 - 6451854
Alignment:
Q  235 cttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||||||||||||| |||||||    
T  6451921 cttaacagttgtagcctaagagacaactttaattcattcaataatattttagagagttttttcaattt 6451854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 8915515 - 8915437
Alignment:
Q  53 gagctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||| ||||| | |||||||| ||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  8915515 gagctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggagggtttccttagta 8915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 8063966 - 8063898
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||||||||||| ||||||| | |||||||| ||| |||||||||||||||| ||||||||||||||    
T  8063966 ttaacagttgtagcttaagaggcatcttttattaattcaataatattttagagaattttctcaatttct 8063898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 27142582 - 27142654
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| ||||||  ||||||| |||||||||| ||| |||||||||| |||||||||||||||||||||    
T  27142582 agcttaacaattgtaggttaagagggaacttttattaattgaataatatttcagagagttttctcaatttctg 27142654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 2767844 - 2767919
Alignment:
Q  233 agcttaacagttgtagcctaagag-ga-aacttttattcattaaataatattttagagag-ttttctcaatttctg 305  Q
    |||||||||||||||||||||||| || |||||||||||| | ||||||||||||||||| |||||||||||||||    
T  2767844 agcttaacagttgtagcctaagagagataacttttattcaattaataatattttagagagtttttctcaatttctg 2767919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 4956037 - 4955966
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||| | |||||||||||||||  | |||||||||||| ||||||||||||| |||||||||||||||||    
T  4956037 agcttacccgttgtagcctaagagtcatcttttattcattcaataatattttagggagttttctcaatttct 4955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 13883073 - 13883007
Alignment:
Q  56 ctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    |||||||| | |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  13883073 ctctttattagaatgagaactcg-ggtcgagttctttagaggtggacgagactgatgcaggagggttt 13883007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 35814790 - 35814856
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||| |||||||| ||||||   ||||||||||||| |||||||||||||||||||||||||||||    
T  35814790 ttaacggttgtagcttaagagacgacttttattcattcaataatattttagagagttttctcaattt 35814856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 11228636 - 11228705
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    |||||||||| |||||||||| ||| |||||||| ||| | | |||||||||||||||||||||||||||    
T  11228636 agcttaacaggtgtagcctaaaaggtaacttttaatcaatcactaatattttagagagttttctcaattt 11228705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 1217550 - 1217484
Alignment:
Q  56 ctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    ||||||||||||| | ||||||| |||||||||||| | |||||||||||||||||| ||||||||||    
T  1217550 ctctttatcaaaacgtgaactcg-ggtcgagttcttcaaaggtggaggagactgatgcaggagggttt 1217484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 1365606 - 1365657
Alignment:
Q  252 aagaggaaacttttattcattaaataatattttagagag-ttttctcaattt 302  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  1365606 aagaggcaacttttattcattcaataatattttagagagtttttctcaattt 1365657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 3778889 - 3778827
Alignment:
Q  233 agcttaacagttgtagcctaagaggaa--acttttattcattaaataatattttagagagttt 293  Q
    |||||||| ||||||| ||||||||||  ||||||||||| | ||||||||||||||||||||    
T  3778889 agcttaacggttgtagtctaagaggaataacttttattcaatcaataatattttagagagttt 3778827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 19404280 - 19404213
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaat-aatattttagagagttttctcaattt 302  Q
    |||| |||| ||| |||||||| |||||||||||||| ||| |||||||||||||||||| |||||||    
T  19404280 ttaagagttatagtctaagaggcaacttttattcattcaataaatattttagagagttttttcaattt 19404213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 1369560 - 1369614
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagact 108  Q
    |||||||||||| ||| |||||||| | |||||||||| ||||||||||||||||    
T  1369560 agctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagact 1369614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 8915338 - 8915279
Alignment:
Q  237 taacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttct 296  Q
    ||||||||| | || ||||| ||  ||||||||||| |||||||||||||||||||||||    
T  8915338 taacagttgaaaccaaagagaaattttttattcattcaataatattttagagagttttct 8915279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 27309762 - 27309719
Alignment:
Q  259 aacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||    
T  27309762 aacttttattcattaaataattttttggagagttttcttaattt 27309719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 11228469 - 11228542
Alignment:
Q  57 tctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||| | |||||||||||| || | ||||||| ||||| |||| |||||||||||||| ||||||| |||||    
T  11228469 tctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtaggatggtttccatagta 11228542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 18790311 - 18790273
Alignment:
Q  267 ttcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  18790311 ttcattcagtaatattttagagagttttctcaatttctg 18790273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 30440653 - 30440725
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30440653 agcttaacagttgtagcataagatgaaacttttattcattcaataatattttagagagttttctcaatttctg 30440725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 24577699 - 24577629
Alignment:
Q  235 cttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  24577699 cttaacagttatagcctaagaggcagcttttattcattcaataatattttagagagttttctcaatttctg 24577629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 22922239 - 22922166
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  22922239 ctttatgaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 22922166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 14130081 - 14130153
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| |||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  14130081 agcttaacaattgtagtctaagaggcaacttttattcattcaataatattttggagagttttctcaatttctg 14130153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 16598082 - 16598154
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||| ||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  16598082 agcttaacggttgtagactaagagacaacttttattcattcaataatattttagagagttttctcagtttctg 16598154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 24578950 - 24578879
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    ||||||||| ||||||| |||| || |||||||||| |||||||||||||||||||||||||| ||||||||    
T  24578950 agcttaacatttgtagcttaaggggcaacttttatttattaaataatattttagagagttttcacaatttct 24578879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 23573280 - 23573350
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttc 124  Q
    |||||||||||||||||| |||||  |||||||||||| |||||||||||||||| |||||| ||||||||    
T  23573280 agctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaagggtttc 23573350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 26377776 - 26377845
Alignment:
Q  62 atcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagta 26377845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 22512435 - 22512372
Alignment:
Q  60 ttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||    
T  22512435 ttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttt 22512372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 26374814 - 26374888
Alignment:
Q  233 agcttaacagttgtagcctaagaggaa--acttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| ||||||||||||||| |  ||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  26374814 agcttaacaattgtagcctaagaggcataacttttattcattcaataataatttagagagttttcttaatttctg 26374888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 24730948 - 24731017
Alignment:
Q  235 cttaacagttg--tagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    |||||||||||  |||||||| ||  |||||||||||||| |||||||||||||||||||||||||||||    
T  24730948 cttaacagttgaatagcctaatagataacttttattcattcaataatattttagagagttttctcaattt 24731017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 10629291 - 10629222
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    |||||||| ||||||| |||||| | ||||||||||| ||||||||||||||||| | ||||||||||||    
T  10629291 agcttaactgttgtagtctaagatgcaacttttattcgttaaataatattttagaaaattttctcaattt 10629222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 16598184 - 16598233
Alignment:
Q  253 agaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  16598184 agaggcaacttttattcattcaataatattttagagagttttctcaattt 16598233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 26377973 - 26378018
Alignment:
Q  259 aacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  26377973 aacttttattcattcaataatattttagagagttttctcaatttct 26378018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 30442445 - 30442514
Alignment:
Q  236 ttaacagttgtagcctaa-gaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||||||||||||||| |||| | ||||| |||||| |||||||||||| ||||||||||||||||||    
T  30442445 ttaacagttgtagcctaaagaggtatcttttgttcattcaataatattttaaagagttttctcaatttct 30442514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 31072300 - 31072235
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctca 298  Q
    |||||||||||||||| |||| |||||| |||||||| || |||||| ||||||||||||||||||    
T  31072300 agcttaacagttgtagtctaaaaggaaaattttattccttcaataatgttttagagagttttctca 31072235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 2688928 - 2688992
Alignment:
Q  67 aatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||| | |||||||||| | |||||||||||||| ||||||||||||||| ||||||    
T  2688928 aatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggagggtttctttagta 2688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 20693718 - 20693787
Alignment:
Q  235 cttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||||||| |||| |  |||||||||||  || ||||||| ||||||||||||||||||||||||    
T  20693718 cttaacagttgtagactaataa-aaacttttattacttcaataatactttagagagttttctcaatttctg 20693787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 24577864 - 24577796
Alignment:
Q  61 tatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgt-aggagggtttcctta 128  Q
    ||||| || |||||||| ||||||| ||||| ||| ||||||||||||||||| ||||| |||||||||    
T  24577864 tatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatgtaaggagagtttcctta 24577796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 2687687 - 2687729
Alignment:
Q  262 ttttattcattaaataatattttagagagttttctcaatttct 304  Q
    ||||||||||| |||||||||| | ||||||||||||||||||    
T  2687687 ttttattcattcaataatatttcaaagagttttctcaatttct 2687729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 2188783 - 2188723
Alignment:
Q  71 agaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||  ||||||||||| | || ||||||||||| | |||||| |||||||||||||    
T  2188783 agaactcggagtcgagttcttcatagatggaggagactcacgtaggaaggtttccttagta 2188723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 2609640 - 2609596
Alignment:
Q  261 cttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||||| |||||||||| |||||| ||| ||||||||||    
T  2609640 cttttattcattcaataatatttcagagagctttatcaatttctg 2609596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 28263937 - 28263867
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||| ||||| || | | |||| |||||| ||||||||||||||||||||||  ||||||||    
T  28263937 agcttaacagttgtaacctaacag-acagtttt-ttcattcaataatattttagagagttttcataatttctg 28263867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 7633996 - 7634068
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7633996 agcttaacagttgtaacataagaggaaacttttattcattcaataatattttagagagttttctcaatttctg 7634068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 13991543 - 13991480
Alignment:
Q  242 gttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  13991543 gttgtagcctaagagggaacttttattcattcaataatattttagagagttttctcaaattctg 13991480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 22716358 - 22716416
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatg 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  22716358 agctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 22988859 - 22988801
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatg 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  22988859 agctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22988801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 17255071 - 17255007
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctc 297  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||    
T  17255071 agcttaaaagttgtagcctaagaggcaacttatattcattcaataatattttagagagttttctc 17255007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 13085483 - 13085420
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggt 121  Q
    ||||||||| ||||||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  13085483 ctttatcaagatgagaactcggggtcgagttcttcagagatggaagagactgatgtaggagggt 13085420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 6659721 - 6659652
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttc 124  Q
    ||||||||||||| ||||||| | | |||||||||||| |||||| |||||||||||||||||||||||||    
T  6659721 agctctttatcaagatgagaatttg-ggtcgagttcttcagaggtagaggagactgatgtaggagggtttc 6659652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 21433735 - 21433667
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||||||||||||| ||||||  || ||||||||||| |||||||||||||||| ||||||||||||    
T  21433735 agcttaacagttgtagc-taagagacaagttttattcattcaataatattttagagaattttctcaattt 21433667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 10494848 - 10494891
Alignment:
Q  262 ttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  10494848 ttttattcattcaataatattttagagagttttctcaatttctg 10494891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 3765380 - 3765311
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||||| ||||||| ||| ||  |||||||||| ||| ||||||||||| |||||||||||||||||    
T  3765380 agcttaacaattgtagcataaaagccaacttttatttattcaataatatttttgagagttttctcaattt 3765311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 10494668 - 10494745
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||| |||||||  || |||||| |||||||||||||| ||| || ||| ||||||||||| ||||||||||||||||    
T  10494668 agctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgagggtttccttagta 10494745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 13990823 - 13990778
Alignment:
Q  260 acttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  13990823 acttttattcattcaataatattttagagagttttttcaatttctg 13990778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 7635033 - 7635108
Alignment:
Q  53 gagctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttcctta 128  Q
    ||||| ||||| | |||||||| | | |||||||||||| |||| |||||||||||||||| |||| |||||||||    
T  7635033 gagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggagagtttcctta 7635108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 9260312 - 9260367
Alignment:
Q  57 tctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatg 112  Q
    ||||||||||||| |||||||| |||||||||||||||| || ||||||| |||||    
T  9260312 tctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatg 9260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 40206067 - 40206137
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagag-agttttctcaatttctg 305  Q
    |||| |||||||| |||||||  || ||||||||||| ||||||||||||||| | |||||||||||||||    
T  40206067 ttaatagttgtagtctaagagataatttttattcattcaataatattttagagaatttttctcaatttctg 40206137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 18689721 - 18689672
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatatttta 285  Q
    ||||||||| ||| |||||| |||||||||||||||| ||||||||||||    
T  18689721 ttaacagttatagtctaagaagaaacttttattcattcaataatatttta 18689672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 38888161 - 38888092
Alignment:
Q  235 cttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||||||||||   ||||||  |||||||||||||| ||  |||||||||||| ||||||||||||||    
T  38888161 cttaacagttgtactttaagagtcaacttttattcattcaaccatattttagagaattttctcaatttct 38888092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 7635210 - 7635269
Alignment:
Q  237 taacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttct 296  Q
    ||||||||| | || ||||| ||  ||||||||||| |||||||||||||||||||||||    
T  7635210 taacagttgcaacccaagagaaattttttattcattcaataatattttagagagttttct 7635269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 9260514 - 9260561
Alignment:
Q  258 aaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||| ||||||||| ||| |||||||||| |||||||||||||||||    
T  9260514 aaactattattcattcaattatattttagatagttttctcaatttctg 9260561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 28897913 - 28897955
Alignment:
Q  260 acttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||    
T  28897913 acttttattcattcaataatattttaaagacttttctcaattt 28897955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 18657242 - 18657193
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatatttta 285  Q
    ||||| ||| |||| ||||| |||||||||||||||| ||||||||||||    
T  18657242 ttaacggttatagcttaagaagaaacttttattcattcaataatatttta 18657193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 18689659 - 18689622
Alignment:
Q  268 tcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  18689659 tcattcaataatattttatagagttttctcaatttctg 18689622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 10927112 - 10927182
Alignment:
Q  235 cttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  10927112 cttaacaattgtagcctaagagacaacttttattcattaaataatattttagagagttttctcaatttctg 10927182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 10925659 - 10925725
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  10925659 ttaacagttgtagcttaagaggaaacttttattcattcaataatattttagagagttttttcaattt 10925725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 23988969 - 23989046
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||| ||||| |||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  23988969 agctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgtaggagggtttccttagta 23989046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 10927850 - 10927925
Alignment:
Q  56 ctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||| | |||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  10927850 ctctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagggtttccttagta 10927925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 8966093 - 8966024
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    |||||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||||| |||||    
T  8966093 agctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtaggaaggttt 8966024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 9199389 - 9199317
Alignment:
Q  233 agcttaacagttgtagcctaagagg-aaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    ||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||    
T  9199389 agcttaacatttgtagcctaagaggcaaacttttattctttcaataatattttagagagttttttcaatttct 9199317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 10926943 - 10927003
Alignment:
Q  57 tctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtagga 117  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  10926943 tctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagga 10927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 239603 - 239673
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttc 303  Q
    |||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| ||||||| ||||||    
T  239603 agcttaacagttgtagtctaaaaggtaacttttattcatttaataatattttagagggttttcttaatttc 239673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 12944032 - 12944104
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| ||||||| ||| | | |||||||||||||| |||| |||||||||||||||||||||||||||    
T  12944032 agcttaacaattgtagcataaaatgcaacttttattcattcaatattattttagagagttttctcaatttctg 12944104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 28660918 - 28660851
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    |||||||||||||||| |||||||  |||||||||| ||| ||||||||||||||||||||||| |||||    
T  28660918 agcttaacagttgtagactaagag--aacttttattaattcaataatattttagagagttttctaaattt 28660851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 9195115 - 9195046
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||||| ||||||||||||||   ||||||||||||| ||||||| ||||||||||||| |||||||    
T  9195115 agcttaacatttgtagcctaagagacgacttttattcattcaataatactttagagagttttttcaattt 9195046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 31522578 - 31522655
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||| |||||| || |||||||||| ||||||||||| ||||||||| | | |||||||||||||||||| ||||||    
T  31522578 agctcattatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggagggtttcattagta 31522655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 31915465 - 31915538
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagag-ttttctcaatttctg 305  Q
    |||||||||| |||||||||||||  |||||||||||| | | || |||||||||||| |||||||||||||||    
T  31915465 agcttaacagatgtagcctaagagataacttttattcaatcagtagtattttagagagtttttctcaatttctg 31915538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 40805620 - 40805677
Alignment:
Q  71 agaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttcctta 128  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||||  |||||||||    
T  40805620 agaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagtttcctta 40805677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 9030936 - 9031002
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagag-agttttctcaattt 302  Q
    |||||||||||| | |||| |||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  9030936 ttaacagttgtaacttaagtggaa-cttttattcattcaataatattttagagaagttttctcaattt 9031002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 23987486 - 23987560
Alignment:
Q  233 agcttaacagttgtagcctaagaggaa--acttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||||| ||||||  |  | ||||||||| | ||||||||||||||||||| ||||||||||||    
T  23987486 agcttaacagttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctg 23987560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 50713658 - 50713701
Alignment:
Q  262 ttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  50713658 ttttattcattcaataatatttttgagagttttctcaatttctg 50713701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 13441980 - 13441913
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    |||||||||||| |||||||||| ||  |||| ||||| |||||||||||||||||||| || |||||||    
T  13441980 agctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaagggttt 13441913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 43681373 - 43681449
Alignment:
Q  233 agcttaacagttgtagcctaagag--gaaacttttattcattaaataatatttt-agag-agttttctcaatttctg 305  Q
    ||||||||||||||||||||| ||  | |||||||||||||| ||||||||||| |||| |||||||| ||||||||    
T  43681373 agcttaacagttgtagcctaatagatgtaacttttattcattcaataatattttaagagaagttttcttaatttctg 43681449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 8221430 - 8221476
Alignment:
Q  259 aacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||||||| ||| |||||| | |||||||||||||||||||    
T  8221430 aacttttattcattcaatgatatttcaaagagttttctcaatttctg 8221476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 21903671 - 21903737
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    |||||||||||||| ||||||  || ||||| ||| | ||||||| |||||| ||||||||||||||    
T  21903671 ttaacagttgtagcttaagagacaaattttactcacttaataatagtttagaaagttttctcaattt 21903737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 40804549 - 40804608
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctc 297  Q
    |||||||||||||||||||||| ||||||  |||||| |||||||| || |||| |||||||    
T  40804549 ttaacagttgtagcctaagaggcaacttt--ttcattcaataatatattcgagacttttctc 40804608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 36694728 - 36694679
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatatttta 285  Q
    |||| ||||||||||||||||  |||||||||| ||| ||||||||||||    
T  36694728 ttaatagttgtagcctaagagacaacttttattaattcaataatatttta 36694679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 36710829 - 36710780
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatatttta 285  Q
    |||| ||||||||||||||||  |||||||||| ||| ||||||||||||    
T  36710829 ttaatagttgtagcctaagagacaacttttattaattcaataatatttta 36710780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 28661238 - 28661175
Alignment:
Q  234 gcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctca 298  Q
    |||||| |||||||| ||| ||| |||||||||| | || || ||||||||||||||||||||||    
T  28661238 gcttaatagttgtagtctatgag-aaacttttatccgttcaacaatattttagagagttttctca 28661175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 46005 - 45932
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  46005 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 45932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 3541947 - 3542020
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  3541947 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 3542020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 30049617 - 30049690
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  30049617 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 30049690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 30051904 - 30051977
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  30051904 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagta 30051977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 14216810 - 14216882
Alignment:
Q  233 agcttaacagttgtagcctaagagga-aacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||    
T  14216810 agcttaacagttgtagcctaagaggataacttttatttattcaataatatttcagagagttttctcaatttct 14216882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 18203183 - 18203250
Alignment:
Q  56 ctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttc 124  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  18203183 ctctttattaaaatgagaactcg-ggtcgagttcttcagaggtggaggagactgatgtaggagggtttc 18203250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 34373959 - 34373887
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||||||||||||| | |||||  ||||| ||||||||||||||||||||||||||||||||    
T  34373959 agcttaacagttgtagcctaagaggcagcttttgatcattcaataatattttagagagttttctcaatttctg 34373887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 34374126 - 34374051
Alignment:
Q  56 ctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||||||||||||||||| ||| |||||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  34374126 ctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagggtttccttagta 34374051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 32361109 - 32361172
Alignment:
Q  60 ttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    |||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggttt 32361172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 24443242 - 24443172
Alignment:
Q  235 cttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||||  |||||||||||| ||||||||    
T  24443242 cttaacagttgtagcctaagagataacttttattcattcaataatattgcagagagttttcttaatttctg 24443172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 22888999 - 22889076
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||| |||||||||| | |||| | ||| ||||||||||| ||||||||||||||||||||| |||||||    
T  22888999 agctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagta 22889076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 22910542 - 22910619
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||| |||||||||| | |||| | ||| ||||||||||| ||||||||||||||||||||| |||||||    
T  22910542 agctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagta 22910619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 12881781 - 12881845
Alignment:
Q  67 aatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||| |||| ||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  12881781 aatgagagctcggggtcgagttcttcttaggtggaggagactgatgtaggagggtttccttagta 12881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 32361284 - 32361356
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagag-ttttctcaatttct 304  Q
    ||||||| ||||||||| ||||||  |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  32361284 agcttaaaagttgtagcttaagagacaacttttattcattcaataatattttagagagtttttctcaatttct 32361356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 22873556 - 22873630
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttcctta 128  Q
    |||||||||||| |||||||||| | | |||| ||| ||||||||||| ||||||||||||||||||||| ||||    
T  22873556 agctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtaggagggttttctta 22873630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 18728019 - 18727946
Alignment:
Q  233 agcttaacagttgtagcctaagagga-aacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||| |||||||||||||  ||| |||||||||||| | ||| ||||||||||||||||||||||||||||    
T  18728019 agcttaagagttgtagcctaaagggataacttttattcaatcaattatattttagagagttttctcaatttctg 18727946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 11658850 - 11658917
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagag-ttttctcaattt 302  Q
    ||||||||| || |||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||    
T  11658850 ttaacagttataacctaagagaaaacttttattcaatcaataatattttagagagtttttctcaattt 11658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 1127170 - 1127239
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||| |||||||| ||||||   || ||||||||||| |||| ||||||||||||||||||||||||    
T  1127170 agcttaatagttgtagtctaagatacaatttttattcattcaatattattttagagagttttctcaattt 1127239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 12778573 - 12778500
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagag--ttttctcaatttctg 305  Q
    |||||||| ||||||||||| |||| |||||||||||||| ||||| |||||| ||||  |||||||||||||||    
T  12778573 agcttaaccgttgtagcctacgaggcaacttttattcattcaataa-attttatagagttttttctcaatttctg 12778500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 8047539 - 8047489
Alignment:
Q  233 agcttaacagttgtagcctaagagga-aacttttattcattaaataatatt 282  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  8047539 agcttaacagttgtagcctaagtggataacttttattcattcaataatatt 8047489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 12778743 - 12778681
Alignment:
Q  61 tatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    ||||| |||||||| | | |||| ||||||| |||||||||||||||||||||| ||||||||    
T  12778743 tatcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagagggttt 12778681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 8050042 - 8049994
Alignment:
Q  233 agcttaacagttgtagcctaagagga-aacttttattcattaaataata 280  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  8050042 agcttaacagttgtagcctaagtggataacttttattcattcaataata 8049994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 12882067 - 12882111
Alignment:
Q  262 ttttattcattaaataatattttagagag-ttttctcaatttctg 305  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  12882067 ttttattcattcaataatattttagagagtttttctcaatttctg 12882111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 11194401 - 11194439
Alignment:
Q  93 agaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  11194401 agaggtggaggagactgatgtaggagagttttcttagta 11194439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 18720019 - 18720069
Alignment:
Q  59 tttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactg 109  Q
    ||||||||||| |||| ||| |||||||||||| | |||||||||||||||    
T  18720019 tttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 8047724 - 8047663
Alignment:
Q  51 gagagctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatg 112  Q
    ||||| ||||||| | ||| |||||||| |||| ||||||| ||||||||||||||| ||||    
T  8047724 gagagttctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatg 8047663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 27822264 - 27822219
Alignment:
Q  261 cttttattcattaaataatattttagagag-ttttctcaatttctg 305  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||    
T  27822264 cttttattcaatcaataatattttagagagtttttctcaatttctg 27822219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 33615678 - 33615608
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcatt----aaataatattttagagagttttctcaattt 302  Q
    |||||||||||||| ||||||  |||||||| ||| |    |||||||||||||||||||||| |||||||    
T  33615678 ttaacagttgtagcttaagagataacttttactcaatcagtaaataatattttagagagttttttcaattt 33615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 2165624 - 2165697
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  2165624 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagta 2165697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 27952718 - 27952649
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  27952718 agctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttt 27952649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 5171758 - 5171687
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||||||||||||||| |||||||  || |||||||||||||||||||||||||||||||||||||||||||    
T  5171758 agcttaacagttgtagtctaagagacaatttttattcattaaataatattttagagagttttctcaatttct 5171687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 280355 - 280279
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagt 130  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| || |||||| ||||    
T  280355 agctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagaagagtttccatagt 280279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 35681950 - 35682027
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||| || ||||||| | |||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  35681950 agctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 35682027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 31636033 - 31636100
Alignment:
Q  56 ctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    ||||||||| |||||||||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  31636033 ctctttatctaaatgagaactcggattcgagttcttcagaggtggaggagactgatgtaggagggttt 31636100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 33051534 - 33051605
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    ||||||||| |||||| |||||||  ||||| |||||||| |||||||||||||||||||||||||||||||    
T  33051534 agcttaacaattgtagtctaagagacaacttatattcattcaataatattttagagagttttctcaatttct 33051605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 32163944 - 32163875
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagag-agttttctcaattt 302  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  32163944 agcttaacagttatagc-taagaggaaacttttattcattcaataatattttagagaagttttctcaattt 32163875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 33053165 - 33053241
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||| | ||| ||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  33053165 agctctttattagaataagaac-cggggtcgagttcttcagaggtggaggagactgatgtagaagggtttccttagta 33053241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 22011131 - 22011197
Alignment:
Q  57 tctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    ||||||| | |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||    
T  22011131 tctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggagggttt 22011197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 23457563 - 23457631
Alignment:
Q  236 ttaacagttgtagcctaagagga--aacttttattcattaaataatattttagagagttttctcaattt 302  Q
    |||||| ||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||    
T  23457563 ttaacaattgtagcctaagagacttaacttttattcattcaataatattttagagagttttctcaattt 23457631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 1218457 - 1218389
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    |||| ||||||||  ||||||  |||||||||||||| |||||||||||||||| ||||||||||||||    
T  1218457 ttaaaagttgtagtataagagacaacttttattcattcaataatattttagagaattttctcaatttct 1218389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 28737782 - 28737825
Alignment:
Q  262 ttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  28737782 ttttattcattcaataatattttagagagttttctcaatttctg 28737825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 32162308 - 32162233
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttag 129  Q
    |||||||||||| ||||||||||| |||| ||||| || |||| ||||||||||| ||||| |||| |||||||||    
T  32162308 agctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgtaagaggatttccttag 32162233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 1518106 - 1518167
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagtttt 294  Q
    ||||||||||||||| ||||||||  ||||| |||||| |||||||||||||||| ||||||    
T  1518106 agcttaacagttgtaacctaagagataacttatattcaataaataatattttagaaagtttt 1518167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 33053333 - 33053405
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| |||| |  ||||||  |||||||||||||| |||||||||||||||  |||||||||||||||    
T  33053333 agcttaacaattgttgtttaagagacaacttttattcattcaataatattttagaggattttctcaatttctg 33053405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 21772293 - 21772360
Alignment:
Q  236 ttaacagttgtagcctaagaggaaacttttattcattaaataatattt-tagagagttttctcaattt 302  Q
    |||||||||||||| ||||||  ||||||||||| || ||||||||||  ||||||||||||||||||    
T  21772293 ttaacagttgtagcttaagagataacttttattcgttcaataatatttcaagagagttttctcaattt 21772360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 4184870 - 4184916
Alignment:
Q  259 aacttttattcattaaataatattttagagag-ttttctcaatttct 304  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4184870 aacttttattcattcaataatattttagagagtttttctcaatttct 4184916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 36648646 - 36648696
Alignment:
Q  81 gtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||||| | || ||||||||||| ||||||||||||||||||||||    
T  36648646 gtcgagttcttcatagatggaggagactcatgtaggagggtttccttagta 36648696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 23457389 - 23457451
Alignment:
Q  62 atcaaaatgagaactcgaggtc-gagttctttagaggtggaggagactgatgtaggagggtttc 124  Q
    |||| |||||||||||| |||| |||||||| ||||||||||| ||||||||||||||| ||||    
T  23457389 atcagaatgagaactcg-ggtcagagttcttcagaggtggaggcgactgatgtaggaggttttc 23457451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 32162141 - 32162070
Alignment:
Q  235 cttaacagttgtagcctaagaggaaacttttattcattaaataatattttagag-agttttctcaatttctg 305  Q
    ||||| ||||||| | ||||||| | |||||||| ||| ||||||||||||||| |||||||||| ||||||    
T  32162141 cttaatagttgtaacgtaagaggcagcttttatttattcaataatattttagagaagttttctcagtttctg 32162070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 36615127 - 36615185
Alignment:
Q  238 aacagttgtagcctaagaggaa--acttttattcattaaataatattttagagagtttt 294  Q
    ||||| |||||||||||||| |  ||||||||||| | |||||||||||||||||||||    
T  36615127 aacagatgtagcctaagaggcataacttttattcaatcaataatattttagagagtttt 36615185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 36614867 - 36614917
Alignment:
Q  81 gtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    ||||||||||| | || ||||||||||| | ||||||||||||||||||||    
T  36614867 gtcgagttcttcatagatggaggagactcacgtaggagggtttccttagta 36614917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 36648890 - 36648942
Alignment:
Q  244 tgtagcctaagaggaa--acttttattcattaaataatattttagagagtttt 294  Q
    |||||||||||||| |  ||||||||||| | |||||||||||||||||||||    
T  36648890 tgtagcctaagaggcataacttttattcaatcaataatattttagagagtttt 36648942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 12966418 - 12966462
Alignment:
Q  259 aacttttattcattaaataatattttagagag-ttttctcaattt 302  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||    
T  12966418 aacttttattcaatcaataatattttagagagtttttctcaattt 12966462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 8536546 - 8536474
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8536546 agcttgacagttgtagcctaagaggcaacttttattcattagataatattttagagagtttcctcaatttctg 8536474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 365944 - 365879
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagg 119  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  365944 agctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgcaggagg 365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 8536719 - 8536653
Alignment:
Q  59 tttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttcc 125  Q
    ||||||| ||| ||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||    
T  8536719 tttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggagggtttcc 8536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 1320215 - 1320150
Alignment:
Q  240 cagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| |||||||  |||||||||||||| |||||||||||||||| ||||||| |||||||    
T  1320215 cagttgtaggctaagagataacttttattcattcaataatattttagagaattttctctatttctg 1320150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 3064116 - 3064063
Alignment:
Q  70 gagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    ||||||||| |||||||||||| |||||||||||||||||||| ||||||||||    
T  3064116 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 3064063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 365766 - 365697
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaattt 302  Q
    ||||||||||||||||||||||||  |||||||||||| | ||||||||||  |||| ||||||| ||||    
T  365766 agcttaacagttgtagcctaagagataacttttattcaatcaataatatttctgagacttttctctattt 365697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 20400788 - 20400732
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagaga 289  Q
    |||||||| |||||||  ||||||  |||||||||||||| ||||||||||||||||    
T  20400788 agcttaacggttgtagtttaagagacaacttttattcattcaataatattttagaga 20400732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 2473045 - 2473000
Alignment:
Q  59 tttatcaaaatgagaactcgaggtcgagttctttagaggtggagga 104  Q
    ||||||| |||||||||||| |||||||||||||| | ||||||||    
T  2473045 tttatcagaatgagaactcggggtcgagttctttaaaagtggagga 2473000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 2107994 - 2107954
Alignment:
Q  265 tattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||| |||| |||||||||||||||||||||| ||||    
T  2107994 tattcattcaatagtattttagagagttttctcaatctctg 2107954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 52708798 - 52708842
Alignment:
Q  261 cttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||| || ||| ||||||||||||||||||||||||||| ||||    
T  52708798 cttttttttattcaataatattttagagagttttctcaatatctg 52708842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 1573 - 1634
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagtttt 294  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  1573 agcttaacagttgtaacctaagaggaaacttttattcattgaataatattttagatagtttt 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 15967 - 16035
Alignment:
Q  237 taacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||||||||| || |||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  15967 taacagttgtagcctacgaagaaacttttattcattcaataatattttatagagttttctaaatttctg 16035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 15902 - 15954
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatatttta 285  Q
    |||||||||||||||||||| || |||||||||||| ||| ||||||||||||    
T  15902 agcttaacagttgtagcctaggaagaaacttttattaattcaataatatttta 15954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 17555 - 17616
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagtttt 294  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||    
T  17555 agcttaacagttgtaacctaagaggaaaattttattcattgaataatattttagatagtttt 17616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 10395 - 10472
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||| |||||||||| | |||| | ||| ||||||||||| ||||||||||||||||||||| |||||||    
T  10395 agctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagta 10472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 49063 - 49129
Alignment:
Q  59 tttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttcc 125  Q
    ||||||| ||| |||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||    
T  49063 tttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgtaggagagtttcc 49129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 49242 - 49300
Alignment:
Q  237 taacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttc 295  Q
    |||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  49242 taacagttgtagtctaagaggtaacttttattcatttaattatattttagagagttttc 49300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 37628 - 37700
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||| ||||||||| |||||||| |||| ||||||||| ||| ||||||||||||||||||  ||||||||    
T  37628 agcttagcagttgtagtctaagaggcaactgttattcatttaattatattttagagagttttcctaatttctg 37700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 37485 - 37523
Alignment:
Q  80 ggtcgagttctttagaggtggaggagactgatgtaggag 118  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  37485 ggtcgagttcttcagaggtggaggagactgatgtaggag 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 18252164 - 18252241
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||| ||||||| |||||||||||| |||| ||||||| |||||| |||||| |||||| ||||||||||||||||||    
T  18252164 agctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggagggtttccttagta 18252241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 21845283 - 21845206
Alignment:
Q  54 agctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggtttccttagta 131  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||  ||||||||| | |||||||| |||||||    
T  21845283 agctctttatcagaatgagaactcggggtcgagttcttcagaggtggaacagactgatgcaagagggttttcttagta 21845206  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 18252340 - 18252403
Alignment:
Q  241 agttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttct 304  Q
    ||||||||||||||||  ||||| |||||||| |||||||||||| ||||||||||||||||||    
T  18252340 agttgtagcctaagagataacttctattcattcaataatattttaaagagttttctcaatttct 18252403  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 19677684 - 19677629
Alignment:
Q  58 ctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgt 113  Q
    |||||| || ||||||||||| |||||||||||| |||||||||||||||||||||    
T  19677684 ctttataaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgt 19677629  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 26140300 - 26140328
Alignment:
Q  274 aataatattttagagagttttctcaattt 302  Q
    |||||||||||||||||||||||||||||    
T  26140300 aataatattttagagagttttctcaattt 26140328  T

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Target: scaffold0251 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 9619 - 9690
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    |||||||||||| ||| ||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  9619 agcttaacagttatagtctaggag-aaacttttattcattcaataatatttcagagagttttctcaatttctg 9690  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 145649 - 145703
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttaga 287  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  145649 agcttaacagttgtagtctaagaggaagcttttattcattcaataatattttaga 145703  T

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Target: scaffold0024; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 144085 - 144022
Alignment:
Q  238 aacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatt 301  Q
    |||||||||||| || |||  |||||||||| ||| ||||||||||||||||||||||||||||    
T  144085 aacagttgtagcatatgagataacttttatttattcaataatattttagagagttttctcaatt 144022  T

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Target: scaffold0024; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 145481 - 145547
Alignment:
Q  56 ctctttatcaaaatgagaactcgaggtcgagttctttagaggtggaggagactgatgtaggagggttt 123  Q
    |||||||||| ||| | |||||| |||| |||||||  ||||||||||||||||||||||||||||||    
T  145481 ctctttatcagaataataactcg-ggtcaagttcttctgaggtggaggagactgatgtaggagggttt 145547  T

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Target: scaffold0090 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 15236 - 15165
Alignment:
Q  233 agcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttctcaatttctg 305  Q
    ||||||||| ||||||||||||  ||| | |||||||||| |||||||||||||||  |||||||||||||||    
T  15236 agcttaacaattgtagcctaaggagaa-cgtttattcattcaataatattttagaggattttctcaatttctg 15165  T

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