View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20882_low_14 (Length: 301)
Name: NF20882_low_14
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_14 |
 | |
|
| [»] scaffold0006 (4 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold1480 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 13646522 - 13646755
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13646522 |
tatactgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagaccttgaggctgcaa |
13646621 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||||||| ||| ||||||| ||||| ||||||||||| || | ||||| ||||| ||||| |
|
|
| T |
13646622 |
gagaaagaatgatccattcggttgaaagagaaaggggaaatggtagagacattgaaaaagatgttctgaattggttggagaaagtgaacgaggtcattga |
13646721 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgt |
263 |
Q |
| |
|
||||| ||| |||||||| |||||||||||| |
|
|
| T |
13646722 |
aaaggcgaatgggcttcaaaacgatcctcgtcgt |
13646755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 20474011 - 20474245
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
20474011 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagatgttaaaggatcatgttgaagaccttgaggctgcaa |
20474110 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||| ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||| || | ||||| | ||| ||| | |
|
|
| T |
20474111 |
gagaaagaatgatccattccgttgaaagagaaaggggaaatggtaaagaaattgaaaaagatgttctgaattggttggagaaagtgaacggggtcattca |
20474210 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtg |
264 |
Q |
| |
|
| ||||||| |||||||| ||||||||||||| |
|
|
| T |
20474211 |
aatggcaaatgggcttcaaaacgatcctcgtcgtg |
20474245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 20557541 - 20557307
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
20557541 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagatgttaaaggatcatgttgaagaccttgaggctgcaa |
20557442 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||| ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||| || | ||||| | ||| ||| | |
|
|
| T |
20557441 |
gagaaagaatgatccattccgttgaaagagaaaggggaaatggtaaagaaattgaaaaagatgttctgaattggttggagaaagtgaacggggtcattca |
20557342 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtg |
264 |
Q |
| |
|
| ||||||| |||||||| ||||||||||||| |
|
|
| T |
20557341 |
aatggcaaatgggcttcaaaacgatcctcgtcgtg |
20557307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 37 - 263
Target Start/End: Original strand, 13667052 - 13667278
Alignment:
| Q |
37 |
ttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaagagaaag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
13667052 |
ttgtgcctattggacgtcaagcaagttacttgatattctacaaaggcaacttcaagaagttaaaggatcatgttgaaaaccttcaggctgcaagagaaag |
13667151 |
T |
|
| Q |
137 |
aatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattgacaaggca |
236 |
Q |
| |
|
|||| |||||||||||| |||| |||| |||||||| ||||||||||| ||||| ||||||||||| || | ||||| ||||| ||||| || ||| |
|
|
| T |
13667152 |
aatgctccattcggttgaaagagaaaggagaaatggtagagaaattgaaaaagatgttctgaattggttggagaaagtgaacgaggtcattgaaaatgca |
13667251 |
T |
|
| Q |
237 |
aatcaacttcaaaatgatcctcgtcgt |
263 |
Q |
| |
|
|||| |||||||| |||||||||||| |
|
|
| T |
13667252 |
aatcggcttcaaaacgatcctcgtcgt |
13667278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 19142509 - 19142262
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | || |||||||||| |
|
|
| T |
19142509 |
tataccgttgtgcctattgggcgtcaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagacctcgaggctgcaa |
19142410 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||||||| |||| ||||||| ||||| ||||||||||| || | ||||| ||||| ||||| |
|
|
| T |
19142409 |
gagaaagaatgatccattcggttgaaagagaaaggggaaatggtaaagagattgaaaaagatgttctgaattggttggagaaagtgaacgaggtcattga |
19142310 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtgttaatgttcggtg |
277 |
Q |
| |
|
|||| ||| |||||||| |||||||| |||| ||||| ||||| |
|
|
| T |
19142309 |
aaaggtgaatgggcttcaaaacgatcctcgccgtgccaatgtccggtg |
19142262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 20364936 - 20365169
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
20364936 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggcaacttcaagaagttaaaggatcatgttgaagaccttcaggctgcaa |
20365035 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||| |||| ||||||||||| |||| ||||||||||||| ||||||||||| |||| | ||||||||| || | ||||| ||||| ||||| |
|
|
| T |
20365036 |
gagaaataatgctccattcggttgcaagagaaaggggaaatggtagagaaattgaaaaacatgttctaaattggttggagaaagtgaacgaggtcattga |
20365135 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgt |
263 |
Q |
| |
|
|| ||||||| |||||||| |||||||||||| |
|
|
| T |
20365136 |
aaatgcaaatcggcttcaaaacgatcctcgtcgt |
20365169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 13418565 - 13418785
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| | ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13418565 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggttacttcaagacgttaaaggatcatgttgaagaccttgaggctgcaa |
13418664 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||| ||| | || | ||||| ||||||| |||||||||||| ||||| ||||||||||| || | ||| ||| ||| ||| | |
|
|
| T |
13418665 |
gagaaagaatgatccattcagttaaaagtgaaagggaaaatggtaaagaaattgaaaaagatgttatgaattggttggagaaagtggatggggtcattaa |
13418764 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaa |
250 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
13418765 |
agaggcgaatcaacttcaaaa |
13418785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 13681130 - 13681306
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13681130 |
tataccgttgtgcctattggacgtcaaacaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagaccttgaggctgcaa |
13681229 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttg |
206 |
Q |
| |
|
|||||||||||| |||||| ||||| || | ||||| ||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
13681230 |
gagaaagaatgatccattcagttgaaagtgaaagggaaaatggtaaagaaattgaaaaagatgttctgaattggttg |
13681306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 13539700 - 13539947
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| || | |||||||||||||||||| | ||||| ||||||| |
|
|
| T |
13539700 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaagttaattttaaggtattaaaggatcatgttgaagaccttgaagctgcaa |
13539799 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||| ||||| ||||||||| || |||| ||||||||||||| |||||||||||| |||| ||||||||||| || | ||||| ||||| ||||| |
|
|
| T |
13539800 |
gagatgtaatgatccattcggtggaaagagaaaggggaaatggtaaagaaattgaaaaaaatgttttgaattggttggagaaagtgaacgaggtcattga |
13539899 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtgttaatgttcggtg |
277 |
Q |
| |
|
||||| ||| ||||||||||| ||||| ||| | |||||| |||| |
|
|
| T |
13539900 |
aaaggcgaattgccttcaaaatgaccctcgccgtttcaatgttaggtg |
13539947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 13502463 - 13502639
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||||||| | | ||||||||||||| |
|
|
| T |
13502463 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagatgttaaattatcatgttgtagaccttgaggctgcaa |
13502562 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttg |
206 |
Q |
| |
|
|||||||||||| |||||| ||| | || | ||||| ||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
13502563 |
gagaaagaatgatccattcagtttaaagtgaaagggaaaatggtaaagaaattgaaaaagatgttctgaattggttg |
13502639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 13607043 - 13607263
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||| | |||||| ||||||||| | | ||||||||||||| |
|
|
| T |
13607043 |
tatactgttgtgcctattggacgtcaagcaagttacttaatattctacaaaggtaacttcaagacgttaaacaatcatgttggagaccttgaggctgcaa |
13607142 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||| ||| | || | ||||| ||||||| |||||||||||| ||||| ||||||||||| || | ||| ||| ||| ||| | |
|
|
| T |
13607143 |
gagaaagaatgatccattcagttaaaagtgaaagggaaaatggtaaagaaattgaaaaagatgttctgaattggttggagaaagtggatggggtcattaa |
13607242 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaa |
250 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
13607243 |
agaggcgaatcaacttcaaaa |
13607263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 28 - 301
Target Start/End: Complemental strand, 16472068 - 16471795
Alignment:
| Q |
28 |
attatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgc |
127 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||| |||||| | ||| ||| || | ||||||| || |
|
|
| T |
16472068 |
attatactgttgtttctgttggacgtcaagcaagttacttgatattctacaaagccaatttcaagatgttagcagttcacgttaaagaccttgaggtcgc |
16471969 |
T |
|
| Q |
128 |
aagagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgatt |
227 |
Q |
| |
|
||| |||||||| | ||||||||||| || |||| |||||||| ||||||| ||||| ||||| ||||| ||||| | ||||||||||| ||| |
|
|
| T |
16471968 |
aagggaaagaataattcattcggttgaagaagaaaggagaaatggtaaagaaatcgaaagagatgttgtgaactggttagatatggtgaatgaggtcatt |
16471869 |
T |
|
| Q |
228 |
gacaaggcaaatcaacttcaaaatgatcctcgtcgtgttaatgttcggtgtacaacatggccgtgccctaattt |
301 |
Q |
| |
|
|| ||||| ||||| ||||||| ||||||||||||| |||||| |||| |||||||| ||| ||| ||||| |
|
|
| T |
16471868 |
gaaaaggcgaatcagcttcaaagagatcctcgtcgtgcaaatgttaggtgctcaacatggtcgttccccaattt |
16471795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 15902857 - 15902628
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||| || ||||||||||||| || ||||| | ||||| ||||||||| | | ||||||||||||| |
|
|
| T |
15902857 |
tatacagttgtgcctatcggacgtctagcaagttacttaatattctacaaagataacttcaagacattaaacaatcatgttggagaccttgaggctgcaa |
15902758 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||| |||||||||| |||| || | ||||||||||||| ||||||||||| ||||| ||||||||||| || | ||| | | ||| ||| | |
|
|
| T |
15902757 |
gagaaagagtgaaccattcagttgcaagtgaaaggggaaatggtagagaaattgaaaaagatgttctgaattggttggagaaagtggacggggtcattaa |
15902658 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcg |
259 |
Q |
| |
|
|||| ||||| |||||||| |||||||| |
|
|
| T |
15902657 |
agaggcgaatcagcttcaaaacgatcctcg |
15902628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 20545975 - 20545923
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaagg |
82 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20545975 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaagg |
20545923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 13580781 - 13580890
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| | | ||||||||||||||||| || ||||| | ||||| ||| ||||||||| ||||||| | ||| |
|
|
| T |
13580781 |
tataccgttgagcctattgtacgtcaagcaaatcacttgatattctacaaaggtaacttcaagaaattaaaagatagtgttgaacaccttgaggatacaa |
13580880 |
T |
|
| Q |
130 |
gagaaagaat |
139 |
Q |
| |
|
|||||||||| |
|
|
| T |
13580881 |
gagaaagaat |
13580890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 19348319 - 19348223
Alignment:
| Q |
175 |
aagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattgacaaggcaaatcaacttcaaaatgatcctcgtcgtgttaatgt |
271 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||| ||||||| | ||||| ||||||||| | |||| | ||||||||||||| |||||| |
|
|
| T |
19348319 |
aagaaattgaaactgatgtagtgaactggttgaaggatgcgaatgagctcattgaaaaggcaaataagcttcgtgaagatcctcgtcgtgctaatgt |
19348223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 20818377 - 20818130
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | |||||||| |||| |
|
|
| T |
20818377 |
tatacttttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagaccttgaggccgcaa |
20818278 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||||||| | |||| ||||||||||||| |||||||||||| ||||| ||||||||||| || | ||||| ||||| ||||| |
|
|
| T |
20818277 |
gagaaagaatgatccattcggttaaaagagaaaggggaaatggtaaagaaattgaaaaagatgttctgaattggttggagaaagtgaacgaggtcattga |
20818178 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtgttaatgttcggtg |
277 |
Q |
| |
|
||||| ||| ||||||||||| ||||| ||| | |||||| |||| |
|
|
| T |
20818177 |
aaaggcgaattgccttcaaaatgaccctcgccgtttcaatgttaggtg |
20818130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 37 - 263
Target Start/End: Original strand, 164667 - 164893
Alignment:
| Q |
37 |
ttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaagagaaag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
164667 |
ttgtgcctattggacgtcaagcaagttacttgatattctacaaaggcaacttcaagaagttaaaggatcatgttgaaaaccttcaggctgcaagagaaag |
164766 |
T |
|
| Q |
137 |
aatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattgacaaggca |
236 |
Q |
| |
|
|||| |||||||||||| |||| |||| |||||||| ||||||||||| ||||| ||||||||||| || | ||||| ||||| ||||| || ||| |
|
|
| T |
164767 |
aatgctccattcggttgaaagagaaaggagaaatggtagagaaattgaaaaagatgttctgaattggttggagaaagtgaacgaggtcattgaaaatgca |
164866 |
T |
|
| Q |
237 |
aatcaacttcaaaatgatcctcgtcgt |
263 |
Q |
| |
|
|||| |||||||| |||||||||||| |
|
|
| T |
164867 |
aatcggcttcaaaacgatcctcgtcgt |
164893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 135703 - 135923
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||| | |||||| ||||||||| | | ||||||||||||| |
|
|
| T |
135703 |
tatactgttgtgcctattggacgtcaagcaagttacttaatattctacaaaggtaacttcaagacgttaaacaatcatgttggagaccttgaggctgcaa |
135802 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||| ||| | || | ||||| ||||||| |||||||||||| ||||| ||||||||||| || | ||| ||| ||| ||| | |
|
|
| T |
135803 |
gagaaagaatgatccattcagttaaaagtgaaagggaaaatggtaaagaaattgaaaaagatgttctgaattggttggagaaagtggatggggtcattaa |
135902 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaa |
250 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
135903 |
agaggcgaatcaacttcaaaa |
135923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 101081 - 101286
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||| | |||||||||| |||||||| ||||||||||| ||| |
|
|
| T |
101081 |
tataccgttgtgccttttggacgtcaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggataatgttgaagatcttgaggctacaa |
101180 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||||||||| |||||| ||| || ||||||| ||| |||||||| ||||| ||||||||||| || | ||||| ||||| ||||| |
|
|
| T |
101181 |
gagaaagaatgaaccatttggttgaaggagaaacacaaaatggtaaagtaattgaaaaagatgttctgaattggttggagaaagtgaacgaggttattga |
101280 |
T |
|
| Q |
230 |
caaggc |
235 |
Q |
| |
|
||||| |
|
|
| T |
101281 |
aaaggc |
101286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 51309 - 51485
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||||||||||||| || || ||||| | ||||||||||||||||| | | ||||| ||||||| |
|
|
| T |
51309 |
tataccgttgtgcctattggacgtcaagcaaaatacttgatattctacaatggtaacttcaagacgttaaaggatcatgttggagaccttgaagctgcaa |
51408 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttg |
206 |
Q |
| |
|
|||| ||| || |||||| ||||| |||| ||||||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
51409 |
gagatagagtgctccattcagttgaaagagaaaggggaaatggtagagaaattgaagaagatgttctgaattggttg |
51485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 22945 - 23179
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
22945 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagaccttgaggctgcaa |
23044 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||||||||| | || ||||||||||||| |||||||||||| ||||| ||||||||||| || | ||||| | ||| ||| | |
|
|
| T |
23045 |
gagaaagaatgatccattcggttgaaaaagaaaggggaaatggtaaagaaattgaaaaagatgttctgaattggttggagaaagtgaacggggtcattca |
23144 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtg |
264 |
Q |
| |
|
| ||||||| |||||||| ||||||| ||||| |
|
|
| T |
23145 |
aatggcaaatgggcttcaaaacgatcctcttcgtg |
23179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 21810748 - 21810953
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
21810748 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagaccttgaggctgcaa |
21810847 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
||| |||||||| |||||||||||| |||| ||||||||||||| |||||||||||| ||||| ||||| ||||| || | ||||| ||||| ||||| |
|
|
| T |
21810848 |
gagcaagaatgatccattcggttgaaagagaaaggggaaatggtaaagaaattgaaaaagatgttctgaatcggttggagaaagtgaacgaggttattga |
21810947 |
T |
|
| Q |
230 |
caaggc |
235 |
Q |
| |
|
||||| |
|
|
| T |
21810948 |
aaaggc |
21810953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1480 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold1480
Description:
Target: scaffold1480; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 1555 - 1748
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
1555 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagaccttgaggctgcaa |
1654 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggt |
223 |
Q |
| |
|
||| |||||||| |||||||||||| |||| |||||||||||| |||||||||||| ||||| ||||||||||| || | ||||| ||||| |
|
|
| T |
1655 |
gagcaagaatgatccattcggttgaaagagaaaggggaaatggcaaagaaattgaaaaagatgttctgaattggttggagaaagtgaacgaggt |
1748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 38061357 - 38061123
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| ||||||||||||||||| | ||||| | ||||| ||| |||||||| ||| ||||||||| |
|
|
| T |
38061357 |
tataccgttgagcctattggacgtcaagcaagttacttgatattctacaaaggttacttcaagacgttaatggagaatgttgaaagccttcaggctgcaa |
38061258 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||| |||||| |||||||||| || | ||||| | ||| ||||| |
|
|
| T |
38061257 |
gagaaagaatgatccattcggttgacagagaaaggggaaatggtaaagaaattgaaaaggatgttttgaattggttagagaaagtgaacggggtcattga |
38061158 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtg |
264 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |
|
|
| T |
38061157 |
aaaggcaaatgggcttcaaaacgatcctcgtcgtg |
38061123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 277
Target Start/End: Complemental strand, 44760 - 44513
Alignment:
| Q |
30 |
tatactgttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaa |
129 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||| | ||||| ||||||| |
|
|
| T |
44760 |
tataccgttgtgcctattggacgtcaagcaagttacttgatattctacaaaggtaattttaaggtattaaaggatcatgttgaagaccttgaagctgcaa |
44661 |
T |
|
| Q |
130 |
gagaaagaatgaaccattcggttgatagagcaaggggaaatggtgaagaaattgaaagggatgtggtgaattggttgaaggatgtgaatgaggtgattga |
229 |
Q |
| |
|
|||| ||||| ||||||||| || |||| ||||||||||||| |||||||||||| |||| ||||||||||| || | ||||| ||||| ||||| |
|
|
| T |
44660 |
gagatgtaatgatccattcggtggaaagagaaaggggaaatggtaaagaaattgaaaaaaatgttttgaattggttggagaaagtgaacgaggtcattga |
44561 |
T |
|
| Q |
230 |
caaggcaaatcaacttcaaaatgatcctcgtcgtgttaatgttcggtg |
277 |
Q |
| |
|
||||| ||| ||||||||||| ||||| ||| | |||||| |||| |
|
|
| T |
44560 |
aaaggcgaattgccttcaaaatgaccctcgccgtttcaatgttaggtg |
44513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 11817 - 11707
Alignment:
| Q |
36 |
gttgtgcctattggacgtcaagcaagttatttgatattctacaaaggcaatttcaaaatgttaaaggatcatgttgaacatcttgaggctgcaagagaaa |
135 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||| | ||||| ||||||||||| | |
|
|
| T |
11817 |
gttgtgccaattggacgccaagcaagttacttgatattctacaaaggtaacttcaagacgttaaaggatcatgttgaagaccttgaagctgcaagagata |
11718 |
T |
|
| Q |
136 |
gaatgaaccat |
146 |
Q |
| |
|
|||| |||||| |
|
|
| T |
11717 |
gaataaaccat |
11707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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