View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_18 (Length: 254)
Name: NF20882_low_18
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_18 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 28608432 - 28608676
Alignment:
| Q |
10 |
ataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaact |
109 |
Q |
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| T |
28608432 |
ataatactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaact |
28608531 |
T |
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| Q |
110 |
cgttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagt |
209 |
Q |
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| T |
28608532 |
cgttggacgtgatggtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagt |
28608631 |
T |
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| Q |
210 |
attgataataaatttgaagcactcagagaggcatatgatgctatc |
254 |
Q |
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| T |
28608632 |
attgataataaatttgaagcactcagagaggcatatgatgctatc |
28608676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 438470 - 438229
Alignment:
| Q |
12 |
aatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcg |
111 |
Q |
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| T |
438470 |
aatactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcg |
438371 |
T |
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| Q |
112 |
ttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtat |
211 |
Q |
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| T |
438370 |
ttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcat |
438271 |
T |
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| Q |
212 |
tgataataaatttgaagcactcagagaggcatatgatgctat |
253 |
Q |
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| T |
438270 |
taccaatacctttgaagcattcaaagaggcatatgatgctat |
438229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 13659803 - 13660044
Alignment:
| Q |
10 |
ataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaact |
109 |
Q |
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| T |
13659803 |
ataatgctcgccaggctacaggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaact |
13659902 |
T |
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| Q |
110 |
cgttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagt |
209 |
Q |
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| T |
13659903 |
caaaggacgtactggtgcacttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagc |
13660002 |
T |
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| Q |
210 |
attgataataaatttgaagcactcagagaggcatatgatgct |
251 |
Q |
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| T |
13660003 |
attaataatacatttgaagcacttggagaggcatatgatgct |
13660044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 13652305 - 13652544
Alignment:
| Q |
12 |
aatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaactcg |
111 |
Q |
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| T |
13652305 |
aatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactca |
13652404 |
T |
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| Q |
112 |
ttggacgtgatggtgcagttgttgcttctcatatggagaagcctagtggccaatctagaacacaaaatcttacgagatcccagatagagttagaaagtat |
211 |
Q |
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| T |
13652405 |
aaggacgtaccggtgcacttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcat |
13652504 |
T |
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| Q |
212 |
tgataataaatttgaagcactcagagaggcatatgatgct |
251 |
Q |
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| T |
13652505 |
taataatacatttgaagcatttggagaggcgtacgatgct |
13652544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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