View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_22 (Length: 249)
Name: NF20882_low_22
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 25002435 - 25002208
Alignment:
| Q |
3 |
ccatccctgaaatccataaaggtcagaaaaaataattaatatgc-ataaacctagtacaaatgaaatgaataactagggtcttagagccaattctgataa |
101 |
Q |
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| T |
25002435 |
ccatccctgctatgcataaaggtcgataaaaataattaatatgttataaacctagtaaaaataaaa-----aactaggggcttaaatccgcttctgataa |
25002341 |
T |
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| Q |
102 |
agcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgttg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25002340 |
agcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgttg |
25002241 |
T |
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| Q |
202 |
gattgttgaattcatcacgacctatgaattgat |
234 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
25002240 |
gatcgttgaattcatcacgacctatgaattgat |
25002208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 24984664 - 24984805
Alignment:
| Q |
93 |
ttctgataaagcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtg |
192 |
Q |
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|||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
24984664 |
ttctgataaagcattagttacctgattgcagcttgaacataataaagatgacgataaaagtaatcgattctataagtatctaaaagggattcttcaagtg |
24984763 |
T |
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| Q |
193 |
ataatgttggattgttgaattcatcacgacctatgaattgat |
234 |
Q |
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| T |
24984764 |
acagtttaggatcgttgaactcatcacgacctgtcaattgat |
24984805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 25044868 - 25044985
Alignment:
| Q |
101 |
aagcattactcacctgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgtt |
200 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || | |||| |
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| T |
25044868 |
aagcattacttacttgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgagagtatctataagggattcttcaagcgacagtgtt |
25044967 |
T |
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| Q |
201 |
ggattgttgaattcatca |
218 |
Q |
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|||| ||||| |||||| |
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| T |
25044968 |
ggatcattgaactcatca |
25044985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 25016046 - 25016119
Alignment:
| Q |
131 |
ataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgttggat |
204 |
Q |
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| T |
25016046 |
ataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggat |
25016119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 4623326 - 4623370
Alignment:
| Q |
128 |
aagataataaagatgacgataaaagtaatcaattctgtcagtatc |
172 |
Q |
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| T |
4623326 |
aagataatatagatgacgataaaagtaatcaattctgttagtatc |
4623370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 25037329 - 25037370
Alignment:
| Q |
131 |
ataataaagatgacgataaaagtaatcaattctgtcagtatc |
172 |
Q |
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|||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
25037329 |
ataataaagatgtcgataaaagtaatcgattctgtaagtatc |
25037370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 29408269 - 29408180
Alignment:
| Q |
115 |
tgattgcagtttgaagataataaagatgacgataaaagtaatcaattctgtcagtatctaaaagggattcttcaagtgataatgttggat |
204 |
Q |
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||||||||| || ||||||||| |||||| ||||||||||||||| ||| | |||||| ||||| |||||||||||| | |||||||| |
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| T |
29408269 |
tgattgcagatttaagataatatagatgattataaaagtaatcaatcctggctgtatctgcaagggcttcttcaagtgagagtgttggat |
29408180 |
T |
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