View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20882_low_24 (Length: 244)

Name: NF20882_low_24
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20882_low_24
NF20882_low_24
[»] chr5 (10 HSPs)
chr5 (17-231)||(34639719-34639934)
chr5 (118-169)||(13838861-13838912)
chr5 (118-169)||(6462384-6462435)
chr5 (108-166)||(4283126-4283184)
chr5 (42-93)||(13263518-13263569)
chr5 (108-147)||(16869957-16869996)
chr5 (118-147)||(1621561-1621590)
chr5 (118-147)||(9004857-9004886)
chr5 (118-146)||(11863386-11863414)
chr5 (108-144)||(41892918-41892954)
[»] chr3 (5 HSPs)
chr3 (108-169)||(38684754-38684815)
chr3 (118-157)||(9198189-9198228)
chr3 (118-147)||(32109551-32109580)
chr3 (118-147)||(32326158-32326187)
chr3 (108-157)||(36879048-36879097)
[»] chr6 (2 HSPs)
chr6 (128-197)||(2255282-2255352)
chr6 (118-159)||(8014699-8014740)
[»] chr2 (5 HSPs)
chr2 (108-169)||(27679099-27679160)
chr2 (118-151)||(44984341-44984374)
chr2 (118-147)||(15804441-15804470)
chr2 (118-151)||(40909949-40909982)
chr2 (118-154)||(31062980-31063016)
[»] chr7 (2 HSPs)
chr7 (121-169)||(24432754-24432802)
chr7 (128-169)||(12473126-12473167)
[»] chr4 (5 HSPs)
chr4 (111-147)||(20988825-20988861)
chr4 (108-147)||(3535194-3535233)
chr4 (118-160)||(21501653-21501695)
chr4 (118-147)||(24418250-24418279)
chr4 (118-147)||(52831491-52831520)
[»] chr1 (7 HSPs)
chr1 (108-168)||(10518256-10518316)
chr1 (108-147)||(20004003-20004042)
chr1 (118-153)||(20791970-20792005)
chr1 (117-147)||(37131516-37131546)
chr1 (118-147)||(15942493-15942522)
chr1 (108-152)||(28736207-28736251)
chr1 (108-160)||(35272615-35272667)
[»] scaffold0004 (1 HSPs)
scaffold0004 (118-147)||(339039-339068)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 34639719 - 34639934
Alignment:
Q  17 acttatagcttataagctggtatgatatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttataacnnnnnnn-agtatgttatagca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  34639719 acttatagcttataagctggtatgatatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttataacttttttttagtatgttatagca 34639818  T
Q  116 tcttttgataagctaattcaagtagcttataggttaaaacttttagcttatcatggtctctcaattttaccctgtaatcttaggctctggttggtaagac 215  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34639819 tcttttgataagctaattcaagtagcttatagcttaaaacttttagcttatcatggtctctcaattttaccctgtaatcttaggctctggttggtatgac 34639918  T
Q  216 ataaatttggtctgtg 231  Q
    ||||||||||| ||||    
T  34639919 ataaatttggtttgtg 34639934  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 13838912 - 13838861
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 169  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||||||||||    
T  13838912 ttttgattagctaattcaagtagcttatagcttaaaacttatagcttatcat 13838861  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 6462435 - 6462384
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 169  Q
    |||||||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  6462435 ttttgataagctaattcaagtagcttatatcttaaagcttatagcttatcat 6462384  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 4283126 - 4283184
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttat 166  Q
    ||||| ||| ||||||||||||||||||| |||||||||| ||||| ||| ||||||||    
T  4283126 ttataccattttttgataagctaattcaaatagcttatagcttaaaccttatagcttat 4283184  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 13263569 - 13263518
Alignment:
Q  42 tatgattaaaaaagacctgtttcgtaacaatcattttctcaccagcttataa 93  Q
    ||||| ||||| |||| ||||| ||||||||||||||||||| |||||||||    
T  13263569 tatgactaaaatagacttgtttggtaacaatcattttctcacaagcttataa 13263518  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 16869996 - 16869957
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttatag 147  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  16869996 ttatagcgttttttgataagctaattcaagtagcttatag 16869957  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 1621590 - 1621561
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  1621590 ttttgataagctaattcaagtagcttatag 1621561  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 9004857 - 9004886
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  9004857 ttttgataagctaattcaagtagcttatag 9004886  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 11863414 - 11863386
Alignment:
Q  118 ttttgataagctaattcaagtagcttata 146  Q
    |||||||||||||||||||||||||||||    
T  11863414 ttttgataagctaattcaagtagcttata 11863386  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 41892954 - 41892918
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagctta 144  Q
    ||||||| | |||||||||||||||||||||||||||    
T  41892954 ttatagcgtgttttgataagctaattcaagtagctta 41892918  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 38684815 - 38684754
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 169  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||| ||| || ||||||||    
T  38684815 ttatagcgttttttgataagctaattcaagtagcttatagcttaaagcttataacttatcat 38684754  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 9198228 - 9198189
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggttaaaactt 157  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  9198228 ttttgataagctaattcaagtagcttttagcttaaaactt 9198189  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 32109551 - 32109580
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  32109551 ttttgataagctaattcaagtagcttatag 32109580  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 32326187 - 32326158
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  32326187 ttttgataagctaattcaagtagcttatag 32326158  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 36879097 - 36879048
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttataggttaaaactt 157  Q
    ||||||||| |||| |||||||||||||||||||||| || ||| |||||    
T  36879097 ttatagcatttttttataagctaattcaagtagcttagagcttataactt 36879048  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 2255282 - 2255352
Alignment:
Q  128 ctaattcaagtagcttataggttaaaacttttagcttatcatggtctctcaattttaccct-gtaatctta 197  Q
    ||||| ||||||||||||||  |||||||| |||||||||||  ||||||||||||| ||| |||||||||    
T  2255282 ctaatccaagtagcttatagcctaaaacttatagcttatcattttctctcaattttatcctcgtaatctta 2255352  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 8014740 - 8014699
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggttaaaactttt 159  Q
    ||||||||||||||||||| |||||||||| ||| |||||||    
T  8014740 ttttgataagctaattcaattagcttatagcttataactttt 8014699  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 27679099 - 27679160
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttatcat 169  Q
    ||||||| | |||| ||||||||||||||||||||||| | ||||| ||| |||||||||||    
T  27679099 ttatagcgttttttaataagctaattcaagtagcttatggcttaaagcttatagcttatcat 27679160  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 44984374 - 44984341
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggtta 151  Q
    ||||||||||||||||||||||||||||||||||    
T  44984374 ttttgataagctaattcaagtagcttataggtta 44984341  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 15804441 - 15804470
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  15804441 ttttgataagctaattcaagtagcttatag 15804470  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 40909949 - 40909982
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggtta 151  Q
    ||||||||||||||||||||||| ||||||||||    
T  40909949 ttttgataagctaattcaagtagtttataggtta 40909982  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 31062980 - 31063016
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggttaaaa 154  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31062980 ttttgataagctatttcaagtagcttatagcttaaaa 31063016  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 24432802 - 24432754
Alignment:
Q  121 tgataagctaattcaagtagcttataggttaaaacttttagcttatcat 169  Q
    ||||||||||||||||||||||||||  ||||||||| || ||||||||    
T  24432802 tgataagctaattcaagtagcttataacttaaaacttatatcttatcat 24432754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 12473167 - 12473126
Alignment:
Q  128 ctaattcaagtagcttataggttaaaacttttagcttatcat 169  Q
    |||||||||||||||||||| ||||| ||| |||||||||||    
T  12473167 ctaattcaagtagcttatagcttaaagcttgtagcttatcat 12473126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 20988861 - 20988825
Alignment:
Q  111 tagcatcttttgataagctaattcaagtagcttatag 147  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20988861 tagcattttttgataagctaattcaagtagcttatag 20988825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 3535194 - 3535233
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttatag 147  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  3535194 ttatagcgttttttgataagctaattcaagtagcttatag 3535233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 21501653 - 21501695
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggttaaaactttta 160  Q
    |||||||||||||||||||||||||||||| ||| || |||||    
T  21501653 ttttgataagctaattcaagtagcttatagcttataattttta 21501695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 24418279 - 24418250
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  24418279 ttttgataagctaattcaagtagcttatag 24418250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 52831491 - 52831520
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  52831491 ttttgataagctaattcaagtagcttatag 52831520  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 10518256 - 10518316
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttataggttaaaacttttagcttatca 168  Q
    ||||| ||| |||||||||||||||| ||||||||||||| ||||| ||| || |||||||    
T  10518256 ttataacattttttgataagctaatttaagtagcttatagcttaaagcttataacttatca 10518316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 20004003 - 20004042
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttatag 147  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  20004003 ttatagcgttttttgataagctaattcaagtagcttatag 20004042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 20792005 - 20791970
Alignment:
Q  118 ttttgataagctaattcaagtagcttataggttaaa 153  Q
    |||||||||||||||||||||||||||||| |||||    
T  20792005 ttttgataagctaattcaagtagcttatagcttaaa 20791970  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 37131546 - 37131516
Alignment:
Q  117 cttttgataagctaattcaagtagcttatag 147  Q
    |||||||||||||||||||||||||||||||    
T  37131546 cttttgataagctaattcaagtagcttatag 37131516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 15942522 - 15942493
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  15942522 ttttgataagctaattcaagtagcttatag 15942493  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 28736251 - 28736207
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttataggttaa 152  Q
    ||||||||| ||| |||||||||||||||||||| ||||| ||||    
T  28736251 ttatagcatttttagataagctaattcaagtagcgtatagcttaa 28736207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 35272667 - 35272615
Alignment:
Q  108 ttatagcatcttttgataagctaattcaagtagcttataggttaaaactttta 160  Q
    ||||||| | ||||||||||||||||| |||||||||| | ||| ||||||||    
T  35272667 ttatagcttgttttgataagctaattccagtagcttatggcttataactttta 35272615  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 339068 - 339039
Alignment:
Q  118 ttttgataagctaattcaagtagcttatag 147  Q
    ||||||||||||||||||||||||||||||    
T  339068 ttttgataagctaattcaagtagcttatag 339039  T

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