View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_26 (Length: 240)
Name: NF20882_low_26
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 48254706 - 48254485
Alignment:
| Q |
19 |
ggtgggagaacatttatggtgcttaatcttgcaccagtagggtgctacccttcattcttagtagaacttcctcataatagttcggaccttgacgaatttg |
118 |
Q |
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| T |
48254706 |
ggtgggagaacatttatggtgcttaatcttgcaccagtagggtgctatccttcattcttagtagaacttcctcataatagttcggaccttgacgaatttg |
48254607 |
T |
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| Q |
119 |
gatgcatggtttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattgaaacaaaccagagaaagtctctcagatgcttctgtcat |
218 |
Q |
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| T |
48254606 |
gatgcatggtttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattgaaacaaaccagagaaagtatctcagatgcttctgtcat |
48254507 |
T |
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| Q |
219 |
atatgtcgatacctacaccgtt |
240 |
Q |
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| T |
48254506 |
atatgtcgatacctacaccgtt |
48254485 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 10499539 - 10499723
Alignment:
| Q |
28 |
acatttatggtgcttaatcttgcaccagtagggtgctacccttcattcttagtagaacttcctcataatagttcggaccttgacgaatttggatgcatgg |
127 |
Q |
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| T |
10499539 |
acatttatggtattaaatcttggtccagttggatgctaccctggatatttggtggagcttcctcatactagttctgacttagatgaacatggatgcataa |
10499638 |
T |
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| Q |
128 |
tttcttacaacaatgcagtagtggactataacaaaatgttgaaagagtcattgaaacaaaccagagaaagtctctcagatgcttc |
212 |
Q |
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| T |
10499639 |
ttacttataacaatgctgtagatgattacaacaaattgttgaaagagacattgactcaaactagaaaaagtttatcagatgcttc |
10499723 |
T |
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