View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_29 (Length: 236)
Name: NF20882_low_29
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 25002495 - 25002705
Alignment:
| Q |
1 |
gcttcagtttgcgatttggactcgtctttgtggatttcaaagacaacttaaaaagacacccaaaactctccgcacattggttcaagaatttcctcaaaag |
100 |
Q |
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| T |
25002495 |
gcttcagtttgcgatttggactcgtctttgtggatttcaaagacaacttgaaaagacacccaaaactctccgcgcattggttcaagaatttcctcaaaag |
25002594 |
T |
|
| Q |
101 |
atcttagacatactatctattatgcatggtttcaagaaaagttttgtttaaatgaannnnnnnngagaagttggttaaatgaacttaggattagaaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25002595 |
atcttagacatactatctattatgcatggtttcaagaaaagttttgtttaaatgaactttttttgagaagttggttaaatgaacttaggattagaaaaaa |
25002694 |
T |
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| Q |
201 |
gtgatatgaaa |
211 |
Q |
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||||||||||| |
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| T |
25002695 |
gtgatatgaaa |
25002705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24984484 - 24984380
Alignment:
| Q |
1 |
gcttcagtttgcgatttggactcgtctttgtggatttcaaagacaacttaaaaagacacccaaaactctccgcacattggttcaagaatttcctcaaaag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24984484 |
gcttcagcttgcgatttggactcgtctttgtggattataacgacgacttgaaaagacacccaaaactctcggcacattggttcaagaatttcctcaaaaa |
24984385 |
T |
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| Q |
101 |
atctt |
105 |
Q |
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||||| |
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| T |
24984384 |
atctt |
24984380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 25044543 - 25044442
Alignment:
| Q |
10 |
tgcgatttggactcgtctttgtggatttcaaagacaacttaaaaagacacccaaaactctccgcacattggttcaagaatttcctcaaaagatcttagac |
109 |
Q |
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||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||| || || |||||||| ||||||||||||| |||||||| |
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| T |
25044543 |
tgcgattcggactcgtctttgtggattttaaaaatggtgtgaaaagacacccaaaactctcggcgcaatggttcaaaaatttcctcaaaaagtcttagac |
25044444 |
T |
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| Q |
110 |
at |
111 |
Q |
| |
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|| |
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| T |
25044443 |
at |
25044442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 24984360 - 24984327
Alignment:
| Q |
175 |
ttaaatgaacttaggattagaaaaaagtgatatg |
208 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
24984360 |
ttaaatgaacttaggattagaaaatagtgatatg |
24984327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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