View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_32 (Length: 225)
Name: NF20882_low_32
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 28931827 - 28931725
Alignment:
| Q |
20 |
aggcacagtttcgagctagccttgacatacagtggtatgtctcagcctattaatgaatatatcttcaaaagttaaatgttacattatggtcaccacaaaa |
119 |
Q |
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| T |
28931827 |
aggcacagtttcgagctagccttgacatacagtggtatgtctcagcctattaatga--atatcttcaaaagttaaatgttacattatggtcaccacaaaa |
28931730 |
T |
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| Q |
120 |
caaga |
124 |
Q |
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||||| |
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| T |
28931729 |
caaga |
28931725 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 10186659 - 10186615
Alignment:
| Q |
30 |
tcgagctagccttgacatacagtggtatgtctcagcctattaatg |
74 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10186659 |
tcgagctagccttgacatacagtggtatgtctcagcctattaatg |
10186615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 35122342 - 35122419
Alignment:
| Q |
32 |
gagctagccttgacatacagtggtatgtctcagcctattaatgaatatatcttcaaaagttaaatgttacattatggtca |
111 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||| |||| |
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| T |
35122342 |
gagctagccttgacatacaatggtatgtctcagcctatcaatga--ataacttcaaaagtttaatgttacattatagtca |
35122419 |
T |
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