View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_33 (Length: 221)
Name: NF20882_low_33
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 8217438 - 8217622
Alignment:
| Q |
21 |
tatatttttgttcagttgggggcttaaatgtttaagaaatttttccaggaaagaggtgctgatcttgcaatcaagtcggacttcgctactcaaacaaaca |
120 |
Q |
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| T |
8217438 |
tatatttttgttcagttgggggcttaaatgtttaagaaatttttccaggaaagaggtgctgatcttgcaatcaagtcggacttcgctactcaaacaaaca |
8217537 |
T |
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| Q |
121 |
ttctcccacattcttcacaagagtcatggatatacaacgatgatgccatctatttgaaaggttggttcctttcatagctttaaat |
205 |
Q |
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| T |
8217538 |
ttctcccacattcttcacaagagtcatggatatacaacgatgatgccatctatttgaaaggttggttcctttcatagctttaaat |
8217622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 28886120 - 28886148
Alignment:
| Q |
1 |
ataattagggacggaggtagtatattttt |
29 |
Q |
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| T |
28886120 |
ataattagggacggaggtagtatattttt |
28886148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30895581 - 30895553
Alignment:
| Q |
1 |
ataattagggacggaggtagtatattttt |
29 |
Q |
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| T |
30895581 |
ataattagggacggaggtagtatattttt |
30895553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7940473 - 7940445
Alignment:
| Q |
1 |
ataattagggacggaggtagtatattttt |
29 |
Q |
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| T |
7940473 |
ataattagggacggaggtagtatattttt |
7940445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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