View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_5 (Length: 504)
Name: NF20882_low_5
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 22 - 492
Target Start/End: Complemental strand, 53538573 - 53538104
Alignment:
| Q |
22 |
aaggttaggtgaccatgtaggctccatgtcctcacttgatcaaaggcttcaacaatcatatgatgagggttagaattagatggcagagctcactattgaa |
121 |
Q |
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| T |
53538573 |
aaggttaggtgaccatgtaggctccatgtcctcacttgatcaaaggcttcaacaatcatatgatgagggttagaattagatggcagagctcactattgaa |
53538474 |
T |
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| Q |
122 |
aatcagcactatcattctttataatcagtgcttctcctctcattatcattcttttgcttgcgagtgacttgcagtaattgttgttcatatgatggaaaac |
221 |
Q |
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| T |
53538473 |
aatcagcactatcattctttataatcagtgcttctcctctcactatcattcttttgcttgcgagtgacttgcagtaattgttgttcatatgatggaaaac |
53538374 |
T |
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| Q |
222 |
taactgcatattgaatgattaagaaatattaattttagttaactgttaaacactgaatcgcatatattggaaaactaacgtgctcactattggatgattt |
321 |
Q |
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| T |
53538373 |
taactgcatattgaatgattaagaaatattaattttagttaactgttaaacactgaatcgcatatattggaaaactaacgtgctcactattggatgattt |
53538274 |
T |
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| Q |
322 |
gtaaacataaaaagggaaataaattaagttataataagcaagcaaacttgttcgataggcagnnnnnnnnnnnnnnnnncataaaacagtcttgctgaga |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53538273 |
gtaaacataaaaagggaaataaattaagttataataagcaagcaaacttgttcgataggcag-aaaaagaaaaaaaaaacataaaacagtcttgctgaga |
53538175 |
T |
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| Q |
422 |
cttatacttaaaaaacaaactgatccagacaaaggacaaaagctggattcaatttaaactaaaaacatgat |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53538174 |
cttatacttaaaaaacaaactgatccagacaaaggacaaaagctggattcaatttaaactaaaaacatgat |
53538104 |
T |
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