View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20882_low_7 (Length: 419)
Name: NF20882_low_7
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20882_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 39961581 - 39961964
Alignment:
| Q |
10 |
attatactacacaaagaaacaacaaaaatttgactagaaaatgtaaaatgatataaaaatttgactaattcctctacatcatacagtcaaacaaacataa |
109 |
Q |
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| T |
39961581 |
attatactacacaaagaaacaacaaaaatttgactagaaaatgtaaaatgatataaaaatttgactaattcctctacatcatacagtcaaacaaacataa |
39961680 |
T |
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| Q |
110 |
tagacatgatttttgaagaaattcaacaaccaacctgtgagagaattacaatctgttcccctttaaaccttgcaaatgaataacgcgcctttgccaataa |
209 |
Q |
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| T |
39961681 |
tagacatgatttttgaagaaattcaacaaccaacctgtgagagaattacaatctgttcccctttaaaccttgcaaatgaataacgcgcctttgccaataa |
39961780 |
T |
|
| Q |
210 |
ctttagctgatcatgaaaagagaaagnnnnnnnnnnctcaatcacaaactcattgcttttcagctttgtgctttaaggctaatccgcaaattcaaaactt |
309 |
Q |
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| T |
39961781 |
ctttagctgatcatgaaaagagaga-aaaaaaaaaactcaatcacaaactcattgctttccagctttgtgctttaaggctaatccgcaaattcaaaactt |
39961879 |
T |
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| Q |
310 |
acccctatacaatcttcacgttcctccctgtcaaaagttacataattaattgatgaaataaataataattcatcaaaaggagacc |
394 |
Q |
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| T |
39961880 |
acccctatacaatcttcacgttcctccctgtcaaaagttacataattaattaatgaaataaataataattcatcaaaaggagacc |
39961964 |
T |
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