View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20882_low_9 (Length: 385)

Name: NF20882_low_9
Description: NF20882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20882_low_9
NF20882_low_9
[»] chr4 (20 HSPs)
chr4 (11-366)||(3671147-3671502)
chr4 (159-366)||(55657450-55657657)
chr4 (173-366)||(52982977-52983170)
chr4 (159-366)||(55619101-55619307)
chr4 (159-366)||(55626405-55626611)
chr4 (167-366)||(55663681-55663880)
chr4 (165-363)||(54860879-54861077)
chr4 (159-346)||(54630127-54630314)
chr4 (24-158)||(55636898-55637032)
chr4 (159-366)||(55637131-55637338)
chr4 (20-158)||(52983286-52983424)
chr4 (24-157)||(54861185-54861318)
chr4 (24-157)||(54629891-54630024)
chr4 (24-158)||(55663993-55664127)
chr4 (24-158)||(55619406-55619540)
chr4 (24-158)||(55626710-55626844)
chr4 (24-158)||(55657756-55657890)
chr4 (246-359)||(54630322-54630435)
chr4 (24-74)||(51316255-51316305)
chr4 (24-113)||(50190412-50190501)
[»] chr8 (3 HSPs)
chr8 (156-366)||(9891426-9891636)
chr8 (24-157)||(9891185-9891318)
chr8 (253-363)||(17220158-17220268)
[»] chr2 (2 HSPs)
chr2 (159-366)||(13403538-13403745)
chr2 (25-158)||(13403306-13403439)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 3671502 - 3671147
Alignment:
Q  11 cagagagcagatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgg 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671502 cagagagtagatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgg 3671403  T
Q  111 gcactctctaatgctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3671402 gcactctctaatgctacatctggcagtacccatgagcaaatcgagtatttggcgagccagggttgcattaagcctctgtgtgatttgctcgtttgctctg 3671303  T
Q  211 atccaaaaattgttactgtctgtttacaatgtcttgagaattttctgaaggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggta 310  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||    
T  3671302 atccaaaaattgttactgtctgtttgcaatgtcttgagaattttctgaaggttggagaagcggagaaaaaccccggttacacgggagatgtcaacttgta 3671203  T
Q  311 tgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtc 366  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  3671202 tgctctgatgataggggacgcggagggattggaaaagattggaaacttgcagagtc 3671147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 159 - 366
Target Start/End: Complemental strand, 55657657 - 55657450
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga 258  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |  |||||||||||||||| |    
T  55657657 ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaa 55657558  T
Q  259 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 358  Q
    ||||||||||||| ||||||| |    || ||| |||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||| ||||||||    
T  55657557 aggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagatcgaaaactt 55657458  T
Q  359 gcagagtc 366  Q
    ||||||||    
T  55657457 gcagagtc 55657450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 173 - 366
Target Start/End: Complemental strand, 52983170 - 52982977
Alignment:
Q  173 ttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctgaaggttggagaagca 272  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||     
T  52983170 ttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattattattgtctgtttagaatgtcttgagaatattctgaaggttggagaagcg 52983071  T
Q  273 gagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtc 366  Q
    |||||||      || ||| | |||||||||| | |||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||    
T  52983070 gagaaaaggttttgtaacacgagagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtc 52982977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 159 - 366
Target Start/End: Complemental strand, 55619307 - 55619101
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga 258  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |  |||||||||||||||| |    
T  55619307 ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaa 55619208  T
Q  259 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 358  Q
    ||||||||||||| ||||||| |    || ||| |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||    
T  55619207 aggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaactt 55619109  T
Q  359 gcagagtc 366  Q
    ||||||||    
T  55619108 gcagagtc 55619101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 159 - 366
Target Start/End: Complemental strand, 55626611 - 55626405
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga 258  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |  |||||||||||||||| |    
T  55626611 ttggtgagccatggttgcattaagcctctgtgtgatttgcttgtttgccctgatccaaaaattgtttctgtctgtttagatggtcttgagaattttctaa 55626512  T
Q  259 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 358  Q
    ||||||||||||| ||||||| |    || ||| |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||    
T  55626511 aggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaactt 55626413  T
Q  359 gcagagtc 366  Q
    ||||||||    
T  55626412 gcagagtc 55626405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 167 - 366
Target Start/End: Complemental strand, 55663880 - 55663681
Alignment:
Q  167 ccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctgaaggttgga 266  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||| || ||||||||||||||||| ||||||||    
T  55663880 ccagggttgcattaaacctctgtgtgatttgcttgtttgccctgatccaacaattgttgctgtctgcttagaaggtcttgagaattttctggaggttgga 55663781  T
Q  267 gaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtc 366  Q
    ||||| |||||||||    || |||  ||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||||||||||||||||||||    
T  55663780 gaagcggagaaaaacttttgtaacaccggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagattgaaaacttgcagagtc 55663681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 165 - 363
Target Start/End: Complemental strand, 54861077 - 54860879
Alignment:
Q  165 agccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctgaaggttg 264  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||| || || ||||||||||| ||||||||||||    
T  54861077 agccagggttgcattaagcctctgtgtgatttgatggtttgccctgatccaagaattgttactgtctgtctagaaggtcttgagaatattctgaaggttg 54860978  T
Q  265 gagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcaga 363  Q
    ||||||  ||||||| |   ||| ||| |||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||| ||| ||||||    
T  54860977 gagaagtggagaaaagctttggtaacacgggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattgataacatgcaga 54860879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 159 - 346
Target Start/End: Original strand, 54630127 - 54630314
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga 258  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||| ||| || || |||||||||||||||| |    
T  54630127 ttggtgagccagggttgcattaagcctctgtgtgatttgctagtttgccctgatccaagaatagttactgtttgtctagaaggtcttgagaattttctaa 54630226  T
Q  259 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaa 346  Q
    ||||||||||||||||||||| |    || |||  ||||||||||||| |||||||| || |||| |||| |  | ||||||||||||    
T  54630227 aggttggagaagcagagaaaagcataagtaacaccggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 54630314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 55636898 - 55637032
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||||| |  ||| ||||| ||||||||||||| |||||    
T  55636898 caggctgttattgaagctagtctgattgcccccctagtcaatcttcttcaaaatgccgagtttgacattgcaaaagaagctgcatgggcactctttaatg 55636997  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
     |||||||||  ||||||||||||||||| |||||    
T  55636998 ttacatctggtggtacccatgagcaaatcaagtat 55637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 159 - 366
Target Start/End: Original strand, 55637131 - 55637338
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga 258  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |  |  |||||||| |||||||||||| ||| || || ||||||||||||||||||    
T  55637131 ttggagagccaaggttgcattaagcctctgtgtgatttgcttgctatccatgatccaagaattgttactgtttgtctagaaggtcttgagaattttctga 55637230  T
Q  259 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 358  Q
    ||||||||||||| || |||| |   ||  ||| |||||||||||||| ||||| || |||||||   ||||| |  || | || | |||||||||||||    
T  55637231 aggttggagaagccgataaaagctatggaaacacgggagatgtcaacttgtatgttcagatgatacctgacgctgacggttgggtagagattgaaaactt 55637330  T
Q  359 gcagagtc 366  Q
    ||||||||    
T  55637331 gcagagtc 55637338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 52983424 - 52983286
Alignment:
Q  20 gatacaggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctct 119  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||| |||||||||| |  ||| ||||| |||||||||||||||    
T  52983424 gatacaggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaatatgccgagtttgacattaaaaaagaagctgcatgggcactctct 52983325  T
Q  120 aatgctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||| | | |  |||||| |||||||||| |||||    
T  52983324 aatgctacgtttagtggtacccctgagcaaatcaagtat 52983286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 54861318 - 54861185
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||| |||||||||||| ||||||| || || |||||||||||||||||||| |||||||||| |  ||| ||||| |||||||||||| ||||||    
T  54861318 caggctgtcattgaagctggtttgattgctcccctagtcaatcttcttcaaaatgctgagtttgacattaaaaaagaagctgcatgggcactcactaatg 54861219  T
Q  124 ctacatctggcagtacccatgagcaaatcgagta 157  Q
    ||||||| ||  ||||||| ||||||||| ||||    
T  54861218 ctacatcaggtggtacccacgagcaaatcaagta 54861185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 54629891 - 54630024
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||| |  ||||||||  |||  ||||||| ||||||    
T  54629891 caggctgttattgaagctggtctgattgctcccctagtcaatcttcttcaaaatgcagagtttgacattacaaaggaagttgcacaggcactcactaatg 54629990  T
Q  124 ctacatctggcagtacccatgagcaaatcgagta 157  Q
     |||||||||  ||||||| ||||| ||| ||||    
T  54629991 ttacatctggtggtacccacgagcatatcaagta 54630024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55664127 - 55663993
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||||||||||||||| ||||| || || || ||||||||||||||||| || |||||   |  ||| ||||| ||||||||| | | |||||    
T  55664127 caggctgttattgaagctggtctaattgctcccctagtaaatcttcttcaaaatgccgattttgaagttcaaaaagaagctgcatgggcattatttaatg 55664028  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    ||||||||||| ||||||||||||||||| |||||    
T  55664027 ctacatctggcggtacccatgagcaaatcaagtat 55663993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55619540 - 55619406
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||||||  |||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||||||||||  |||||    
T  55619540 caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg 55619441  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||   |||| |||||||||||| |||||    
T  55619440 ctacatctgatggtactcatgagcaaatcaagtat 55619406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55626844 - 55626710
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||| ||||||  |||||    
T  55626844 caggctgttatcgaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgtgcactccgtaatg 55626745  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||   |||| |||||||||||| |||||    
T  55626744 ctacatctgatggtactcatgagcaaatcaagtat 55626710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 55657890 - 55657756
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    |||||||||||  |||||||||||||||| || || |||||||||||||||||||| ||| |||  | |  ||| ||||| ||||||||||||  |||||    
T  55657890 caggctgttatcaaagctggtctgattgctcccctagtcaatcttcttcaaaatgccgagcttgcgattaaaaaagaagctgcatgggcactccgtaatg 55657791  T
Q  124 ctacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||   |||| |||||||||||| |||||    
T  55657790 ctacatctgatggtactcatgagcaaatcaagtat 55657756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 54630322 - 54630435
Alignment:
Q  246 gagaattttctgaaggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaa 345  Q
    ||||| ||||||||||||||||||||||||||||     ||| ||| |||||||||||| | |||||||| |||||||||||| |    |||||||||||    
T  54630322 gagaaatttctgaaggttggagaagcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaa 54630421  T
Q  346 agattgaaaacttg 359  Q
    ||||||||||||||    
T  54630422 agattgaaaacttg 54630435  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 51316255 - 51316305
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaa 74  Q
    ||||||||||||||||||||||| ||||| || |||||| |||||||||||    
T  51316255 caggctgttattgaagctggtctcattgctcccctggtcgatcttcttcaa 51316305  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 50190501 - 50190412
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggca 113  Q
    |||||||||||||| || ||||| ||||| || || ||||  |||||||||||||| |||||||||| |  ||| ||||| |||||||||    
T  50190501 caggctgttattgatgccggtcttattgctccacttgtcagacttcttcaaaatgcagagtttgacattaaaaaagaagctgcatgggca 50190412  T

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Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 156 - 366
Target Start/End: Original strand, 9891426 - 9891636
Alignment:
Q  156 tatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9891426 tatttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgaggattttc 9891525  T
Q  256 tgaaggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaa 355  Q
    |||||||||||||||| | |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  9891526 tgaaggttggagaagcggggaaaaaccccggttacacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattgaaaa 9891625  T
Q  356 cttgcagagtc 366  Q
    |||||||||||    
T  9891626 cttgcagagtc 9891636  T

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Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 9891185 - 9891318
Alignment:
Q  24 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891185 caggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatg 9891284  T
Q  124 ctacatctggcagtacccatgagcaaatcgagta 157  Q
    ||||||||||||||||||||||||||||||||||    
T  9891285 ctacatctggcagtacccatgagcaaatcgagta 9891318  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 363
Target Start/End: Original strand, 17220158 - 17220268
Alignment:
Q  253 ttctgaaggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattga 352  Q
    ||||||||||||||||||| ||||||| |   ||| ||| |||||||||||||| ||||||||  |||||||| || || | ||||||||||||||||||    
T  17220158 ttctgaaggttggagaagcggagaaaagctttggtaacacgggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattga 17220257  T
Q  353 aaacttgcaga 363  Q
     ||| ||||||    
T  17220258 taacatgcaga 17220268  T

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Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 159 - 366
Target Start/End: Original strand, 13403538 - 13403745
Alignment:
Q  159 ttggcgagccagggttgcattaagcctctgtgtgatttgcttgtttgctctgatccaaaaattgttactgtctgtttacaatgtcttgagaattttctga 258  Q
    |||| ||||||||||||||||||||||||||||||| | ||||||||| | ||||||| ||||||||| ||||||||| || ||||||||||| ||||||    
T  13403538 ttggtgagccagggttgcattaagcctctgtgtgatcttcttgtttgccccgatccaagaattgttaccgtctgtttagaaggtcttgagaatattctga 13403637  T
Q  259 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 358  Q
    || |||||||||||||||||| |   ||| ||  |||||||||||||| |||||||| ||||||||| || |||| |||||||||||||||||| ||| |    
T  13403638 agattggagaagcagagaaaagctttggtaacgcgggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattgagaacct 13403737  T
Q  359 gcagagtc 366  Q
    ||||||||    
T  13403738 gcagagtc 13403745  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 13403306 - 13403439
Alignment:
Q  25 aggctgttattgaagctggtctgattgcccctctggtcaatcttcttcaaaatgcggagtttgacactttaaaggaagcagcatgggcactctctaatgc 124  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||| |  ||| ||||| |||||||||||||| |||||    
T  13403306 aggctgttattgaagccggactgattgctcctctggtcaatcttcttcaaaatgccgaatttgacattaaaaaagaagctgcatgggcactctccaatgc 13403405  T
Q  125 tacatctggcagtacccatgagcaaatcgagtat 158  Q
    |||||||||| ||||||||||||||||| |||||    
T  13403406 tacatctggcggtacccatgagcaaatcaagtat 13403439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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