View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20883_high_2 (Length: 429)
Name: NF20883_high_2
Description: NF20883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20883_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Complemental strand, 29293051 - 29292651
Alignment:
| Q |
6 |
agtagcataggaagccatggatgaaaatagctcaaataatacagctataggtatttacttctttgaaatttatactttaatgttttctagcatttgtttc |
105 |
Q |
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| T |
29293051 |
agtagcagaggaagccatggatgaaaatagctcaaataatacagctataggtatttactt---tgaaatttatactttaatgttttctagcatttgtttc |
29292955 |
T |
|
| Q |
106 |
tttttaagaaatacttattagtcacaaatatttgttaagagtttcttaaagcttaaaaatgaatttataagtgagagacatcattcactttataaagaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29292954 |
tttttaagaaatacttattagtcacaaatatttgttaagagtttcttaaagcttaaaaatgaatttataagtgagagacatcattcactttataaagaat |
29292855 |
T |
|
| Q |
206 |
tttcgtagggacaaattaaccgcaatttaaaatgtaagatgatatcaaaacgtgtaaaacattcattaggccattcatctctacctccaaatattaagtc |
305 |
Q |
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| T |
29292854 |
tttcgtagggacaaattaaccgcaatttaaattgtaag-----atcaaaacgtgtaaaatattcattaggccatttatctctacctccaaatattaagtc |
29292760 |
T |
|
| Q |
306 |
ctgggcgtggaatgatgtgttcaaagactcacattagattagataaaacattaaaataaatttataattgagaaatatctctctttctacttgttggttt |
405 |
Q |
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| T |
29292759 |
ttaggcgtggaatgatgtgttcaaagactcacattagattagataaaacattaaaataaatttataagtgagaaatatctctctttctactcgttggttt |
29292660 |
T |
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| Q |
406 |
tgttgtttt |
414 |
Q |
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| T |
29292659 |
tgttgtttt |
29292651 |
T |
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