View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20883_low_1 (Length: 606)
Name: NF20883_low_1
Description: NF20883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20883_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 29009076 - 29008492
Alignment:
| Q |
1 |
catttgcacgctactattttcactgaaactaattcttcaatttcatttgacactgttacggtgttatattcattcaattagatgaagaatttgaatcgaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
29009076 |
catttgcacgctacaattttcactgaaactaattcttcaattgcatttgatactgttacggtgttgtattcattcgattagatgaagaatttgaatcgaa |
29008977 |
T |
|
| Q |
101 |
gctatagttaactctgtgnnnnnnnnnnnnnnnnnnnnnnnntaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29008976 |
gctatagttaactctgtgtttttgattttttggtttgatttgtaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcg |
29008877 |
T |
|
| Q |
201 |
attctcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttccgcctgggatcttgaatccaatatgcaggtttgggcttccactgagagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29008876 |
attctcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttccgcctgggatcttgaatccaatatgcaggattgggcttccactgagagct |
29008777 |
T |
|
| Q |
301 |
tcaacgtcggcgacgatctcggtacgtttcttcatgtcttgaattgatttcaacagaatcattttcgtgaaaatgcaaaaaacggttacgatcttatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29008776 |
tcaacgtcggcgacgatctcggtacgtttcttcatgtcttgaattgatttcaacagaatcattttcgtgaaaatacaaaaaacggttacgatcttatatt |
29008677 |
T |
|
| Q |
401 |
attaatctttgaattttctgaaactttctatatattttggtaaagattttctgaaattttgttaaatctagcaagtgcttacaaactaggtaatgattag |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29008676 |
attaatctttgaattttctgaaactttgtatatattttggtaaagaatttctgaaattttgttaaatctagcaagtgcttacaaactaggtaatgattag |
29008577 |
T |
|
| Q |
501 |
agtattaattaggttaaggtactttaggttcgtttcctaattagttgaatttatatgaaactttattaactaatgatagagtatt |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29008576 |
agtattaattaggttaaggtactttaggttcgtttcctaattagttgaatttatatgaaactttattaactaatgatagagtatt |
29008492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 293 - 582
Target Start/End: Original strand, 21408425 - 21408711
Alignment:
| Q |
293 |
tgagagcttcaacgtcggcgacgatctcggtacgtttcttcatgtcttgaattgatttcaacagaatcattttcgtgaaaatgcaaaaaa--cggttacg |
390 |
Q |
| |
|
|||||||||||| ||||| ||| || | |||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||| | |||||| |
|
|
| T |
21408425 |
tgagagcttcaatgtcggtgacaattttggtacgtttcttcatgtcttga-----tttcaatagaatcatttttgtgaaaacacaaaaaaaacagttacg |
21408519 |
T |
|
| Q |
391 |
atcttatattattaatctttgaattttctgaaactttctatatattttggtaaagattttctgaaattttgttaaatctagcaagtgcttacaaactagg |
490 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
21408520 |
atcttgtataattaatctttgaattttctgaaactttgtatattttttggtaaagattttctaaaattttgtaaaatctagcaagtgcttgcaaactaag |
21408619 |
T |
|
| Q |
491 |
taatgattagagtattaattaggttaaggtactttaggttcgtttcctaattagttgaatttatatgaaactttattaactaatgatagagt |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
21408620 |
taatgattagagtattaattaggttaaggtaatttaggtttgtttcctaattagttgaatttatctaaaactttattaactgatgatagagt |
21408711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University