View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20884_high_11 (Length: 386)
Name: NF20884_high_11
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 15145280 - 15144909
Alignment:
| Q |
1 |
gtgatgaagctatagactatacatgtgtacattaagcaatgtttaagtaaaaaacaaaatccttcaacaatctaaccatacatagggcattaagcaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15145280 |
gtgatgaagctatagactatacatgtgtacattaagcaatgtttaagtaaaaaacaaaatccttcaacaatctaaccatacatagggcattaagcaattt |
15145181 |
T |
|
| Q |
101 |
tatggaaaatacaaagatactatcatagatatcactccaatgcaaattctttttcatatgccgctgctggcagttct---ctggtatttgtaacagcaca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
15145180 |
tatggaaaatacaaagatactatcatagatatcactccaatgcaaattctttttcatatgccgctgctggcagttctgtatttgtaattgtaacagcaca |
15145081 |
T |
|
| Q |
198 |
tgaaacaaaatttcttgttatgattggattgcaatttataaacaattgaaatcaaggaacatatttaagcatgatcagtattattgtgaacaaaagttct |
297 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15145080 |
ttaaacaaaatttcttgttgtgattggattgcaattcataaacaattgaaatcaaagaacatatttaagcatgatcagtattattgtgaacaaaagttct |
15144981 |
T |
|
| Q |
298 |
atatgcatagaaataagcaataaaatacaaagaaaaagcaaatgatcagttcagagaagttttggagagaaac |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15144980 |
atatgcatagaaataagcaataaaatacaaag-aaaagcaaatgatcagttcacagaagttttggagagaaac |
15144909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University