View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_high_14 (Length: 354)
Name: NF20884_high_14
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 35 - 337
Target Start/End: Complemental strand, 41358804 - 41358502
Alignment:
| Q |
35 |
ttgatacggaactcaaaaaatttctcaagtcatggaactcacatttaattcataagaaatatacaagctttaggaaactatttatgaatgaactcggata |
134 |
Q |
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| T |
41358804 |
ttgatacggaactcaaaaaatttctcaagtcatggaaatcgcatttaattcataagaaatatacatgctttaggaaactatttatgaatgaactcggata |
41358705 |
T |
|
| Q |
135 |
ttagatagagaggtaatttatatactcaatatcgaaagttttggttaaagatgtggtgtatcgatgatcctctatcattagcctgttgctctcggcgctt |
234 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41358704 |
ttagatagagaggtaatctatatactcaatatcgaaggttttggttaaagatgtggtgtatcgatgatcctctatcattagcctgttgctctcggcgctt |
41358605 |
T |
|
| Q |
235 |
cccctcactcggaaacaagtggtaccagagccttatagctcaccttggtgggagagcagaagggaaatatgatattggatccatgtgtcgaaagtcttct |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41358604 |
cccctcactcggaaacaagtggtaccagagccttatagctcaccttggtgggagagcagaagagaaatatgatattggatccatgtgtcgaaagtcttct |
41358505 |
T |
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| Q |
335 |
tga |
337 |
Q |
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||| |
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| T |
41358504 |
tga |
41358502 |
T |
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