View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20884_high_2 (Length: 706)

Name: NF20884_high_2
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20884_high_2
NF20884_high_2
[»] chr6 (5 HSPs)
chr6 (25-691)||(31602154-31602825)
chr6 (22-83)||(10682533-10682594)
chr6 (41-85)||(30775381-30775425)
chr6 (41-83)||(2844161-2844203)
chr6 (33-85)||(30349199-30349251)
[»] chr7 (10 HSPs)
chr7 (35-85)||(12879279-12879329)
chr7 (322-416)||(43404055-43404149)
chr7 (22-85)||(43598849-43598912)
chr7 (30-81)||(41159385-41159436)
chr7 (34-83)||(40160367-40160416)
chr7 (323-387)||(41181188-41181252)
chr7 (35-83)||(48252913-48252961)
chr7 (40-83)||(36725816-36725859)
chr7 (41-79)||(43692580-43692618)
chr7 (22-83)||(22790444-22790505)
[»] chr3 (6 HSPs)
chr3 (22-83)||(49644389-49644450)
chr3 (35-83)||(28939698-28939746)
chr3 (41-83)||(11467231-11467273)
chr3 (35-85)||(20809643-20809693)
chr3 (35-72)||(35496132-35496169)
chr3 (35-83)||(40793197-40793245)
[»] chr4 (9 HSPs)
chr4 (22-83)||(38567992-38568053)
chr4 (22-74)||(43264466-43264518)
chr4 (22-85)||(46382040-46382103)
chr4 (22-83)||(55876008-55876069)
chr4 (35-83)||(2681132-2681180)
chr4 (35-83)||(9268356-9268404)
chr4 (35-83)||(52327034-52327082)
chr4 (35-85)||(206290-206340)
chr4 (35-83)||(41377407-41377455)
[»] chr2 (6 HSPs)
chr2 (35-83)||(9104595-9104643)
chr2 (35-83)||(32914484-32914532)
chr2 (344-398)||(27442880-27442934)
chr2 (35-83)||(40095816-40095864)
chr2 (35-73)||(7395460-7395498)
chr2 (35-75)||(13081147-13081187)
[»] chr1 (7 HSPs)
chr1 (309-397)||(29634176-29634264)
chr1 (22-85)||(50428501-50428564)
chr1 (35-83)||(46823657-46823705)
chr1 (42-85)||(1035776-1035819)
chr1 (42-85)||(37457655-37457698)
chr1 (41-85)||(23571030-23571074)
chr1 (35-83)||(51613279-51613327)
[»] scaffold0015 (1 HSPs)
scaffold0015 (35-83)||(56613-56661)
[»] chr8 (2 HSPs)
chr8 (35-83)||(9682385-9682433)
chr8 (35-83)||(17312877-17312925)
[»] chr5 (3 HSPs)
chr5 (17-82)||(2907776-2907841)
chr5 (42-83)||(4925098-4925139)
chr5 (41-85)||(39060227-39060271)


Alignment Details
Target: chr6 (Bit Score: 538; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 25 - 691
Target Start/End: Original strand, 31602154 - 31602825
Alignment:
Q  25 gacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaactatannnnnnnnnaattatcaataccacttatgaaaactctaa 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||         |||||||||||| |||||||||||||||||    
T  31602154 gacctcattcaatattttatattaattcacacttctcaattatttaaatatctcaattatatttttttttaattatcaatac-acttatgaaaactctaa 31602252  T
Q  125 aatggatctcagtaaaccacacaacatattctgattcatatttgtaatcaatttcatattagtttttacatctagaaagtagtaaagatgtggtgccaag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  31602253 aatggatctcagtaaaccacacaacatattctgattcatatttgtaatcaatttcatattagtttttatatatagaaagtagtaaagatgtggtgccaag 31602352  T
Q  225 tagaggcaccatgcaaaatatagacagaaatggattctctgcaatgactgcagggtcaagtgaaatcacggtcattgnnnnnnntgaaagcatgcaaaat 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||||||||| |||||    
T  31602353 tagaggcaccatgcaaaatatagacagaaatggattctctgcaatgactgcagggtcaagtgaaatcatggtcattgaaaaaaatgaaagcatggaaaat 31602452  T
Q  325 taaatgcagaaatcaaaatagataaagtgtttaatggtattgatgttgacaccgtagaaaactttagagatttctactgcacgaaatccattttcaatat 424  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31602453 taaatgcagaaattaagatagataaattgtttaatggtattgatgttgacaccgtagaaaactgtagagatttctactgcacgaaatccattttcaatat 31602552  T
Q  425 agacacggttgttaagtgtcaaacgggaggaatctacccaccttctatatgaaaggttgcaaagctcctaccaaatcgtgtgttcaaaaatcggaaaaaa 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31602553 agacacggttgttaagtgtcaaacgggaggaatctacccaccttctatatgaaaggttgcaaagctcctaccaaattgtgtgttcaaaaatcggaaaaaa 31602652  T
Q  525 tttaaaataacatatccttacaaatattttataatagatcatgacgggagaaatatacccatcttctatgaaaggttgcagagcttccactaaatcatgg 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31602653 tttaaaataacatatccttacaaatattttataatagatcatgacgggagaaatatacccatcttctatgaaaggttgcagagcttccactaaatcatgg 31602752  T
Q  625 gctcgaaatatgttatgatacatcataaca------ccgacgccgacgccaaattcactcaatactgcctatg 691  Q
    |||||||||||||||||||||||||| |||      |||||||||||||||||||||||||||||||||||||    
T  31602753 gctcgaaatatgttatgatacatcatgacaccgacgccgacgccgacgccaaattcactcaatactgcctatg 31602825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 10682594 - 10682533
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  10682594 atggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaacta 10682533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 30775381 - 30775425
Alignment:
Q  41 ttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||    
T  30775381 ttatattacttcacacttttcaattatttaaaccactcaactata 30775425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 2844203 - 2844161
Alignment:
Q  41 ttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||| |||||||||| ||||||||||||| |||||||||    
T  2844203 ttatattacttcacacttcccaattatttaaaccactcaacta 2844161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 30349199 - 30349251
Alignment:
Q  33 tcaatattttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    ||||||| |||||||| |||| ||||||||| ||||||||||| |||| ||||    
T  30349199 tcaatatattatattacttcatacttctcaaatatttaaacaattcaattata 30349251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12879279 - 12879329
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12879279 aatattttatattacttcacacttctcaattatttaaacaacacaactata 12879329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 43404055 - 43404149
Alignment:
Q  322 aattaaatgcagaaatcaaaatagataaagtgtttaatggtattgatgttgacaccgtagaaaactttagagatttctactgcacgaaatccatt 416  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||||| | |  | | |||||| |||||||||| || ||| ||||||||||    
T  43404055 aattaaatggagaaatcaaaagagataaagtgtttaatgatattgatgttaagattgcataaaactgtagagatttccacagcaggaaatccatt 43404149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 43598912 - 43598849
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||  ||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||    
T  43598912 atggaccctacttaatatattatattagttcacacttctcaattatttaaaccactcaactata 43598849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 41159385 - 41159436
Alignment:
Q  30 cactcaatattttatattaattcacacttctcaattatttaaacaactcaac 81  Q
    |||||||||| |||||||| |||||||||  |||||||||||||||||||||    
T  41159385 cactcaatatattatattatttcacactttccaattatttaaacaactcaac 41159436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 40160416 - 40160367
Alignment:
Q  34 caatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||| |||||||| || || ||||||||||||||||||||||||||||    
T  40160416 caatatattatattacttaacgcttctcaattatttaaacaactcaacta 40160367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 41181188 - 41181252
Alignment:
Q  323 attaaatgcagaaatcaaaatagataaagtgtttaatggtattgatgttgacaccgtagaaaact 387  Q
    |||||||| |||||| |  | |||||||||||||||||||| |||||||||||| | ||||||||    
T  41181188 attaaatgtagaaattaggagagataaagtgtttaatggtagtgatgttgacactgcagaaaact 41181252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 48252961 - 48252913
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||||||||| |||||||||  ||||||||||||| |||||||||    
T  48252961 aatattttatattacttcacactttccaattatttaaaccactcaacta 48252913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 36725859 - 36725816
Alignment:
Q  40 tttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||||||| || ||||||||||||||||||||| |||||||||    
T  36725859 tttatattattttacacttctcaattatttaaaccactcaacta 36725816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 43692618 - 43692580
Alignment:
Q  41 ttatattaattcacacttctcaattatttaaacaactca 79  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  43692618 ttatattatttcacacttctcaattatttaaaccactca 43692580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 22790444 - 22790505
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||| ||||| ||||||||| ||||| || || ||| |||||||||||||||| |||||||    
T  22790444 atggatctcacacaatattttgtattattttacgcttttcaattatttaaacaattcaacta 22790505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 49644450 - 49644389
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  49644450 atggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaacta 49644389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 28939698 - 28939746
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  28939698 aatatattatattacttcacacttctcaattatttaaactactcaacta 28939746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 11467231 - 11467273
Alignment:
Q  41 ttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||| |||||||||||||||||||||||| | |||||||    
T  11467231 ttatattacttcacacttctcaattatttaaaccaatcaacta 11467273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 20809643 - 20809693
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||||||||| |||| |||| | |||||||||||||||| |||||||    
T  20809643 aatattttatattacttcatactttttaattatttaaacaacttaactata 20809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 35496132 - 35496169
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaa 72  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  35496132 aatatattatattacttcacacttctcaattatttaaa 35496169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 40793197 - 40793245
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||| ||||||||| ||| ||||| |||||||||||||| |||||||||    
T  40793197 aatactttatattacttctcacttttcaattatttaaaccactcaacta 40793245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 38568053 - 38567992
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||||||||||||| |||||||| |||  |||| |||||||||||||| |||||||||    
T  38568053 atggacctcactcaatatattatattacttcttacttttcaattatttaaaccactcaacta 38567992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 43264466 - 43264518
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaaca 74  Q
    |||||||||||  ||||| |||||||| |||||||||||||||||||||||||    
T  43264466 atggacctcacctaatatattatattacttcacacttctcaattatttaaaca 43264518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 46382103 - 46382040
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||  ||| ||||| |||||||| |||||||||||||||||||||||| |||| ||||||    
T  46382103 atggaccctacttaatatattatattagttcacacttctcaattatttaaaccactccactata 46382040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 55876008 - 55876069
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||  ||| ||||| |||||||| |||||||||||||||||||||||| | |||||||    
T  55876008 atggaccctacttaatatattatattacttcacacttctcaattatttaaactattcaacta 55876069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 2681180 - 2681132
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||| ||||||||| ||||||||| |||||||||||||| |||||||||    
T  2681180 aatactttatattacttcacacttttcaattatttaaaccactcaacta 2681132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 9268356 - 9268404
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||| ||||||||| ||||||||| |||||||||||||| |||||||||    
T  9268356 aatactttatattacttcacacttttcaattatttaaaccactcaacta 9268404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 52327082 - 52327034
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||||||||| ||||||||| |||||||||||||  |||||||||    
T  52327082 aatattttatattacttcacacttttcaattatttaaatcactcaacta 52327034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 206340 - 206290
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||||||||| |||| | || |||||||||||||||| |||||||||    
T  206340 aatattttatattatttcatatttttcaattatttaaacaattcaactata 206290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 41377455 - 41377407
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||| |||||||| ||| |||||||||||||||| ||| |||||||||    
T  41377455 aatatattatattacttcccacttctcaattattttaactactcaacta 41377407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 9104595 - 9104643
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  9104595 aatattttatattatttcacaattctcaattatttaaaccactcaacta 9104643  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 32914532 - 32914484
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  32914532 aatattttatattacttcacacttttcaattatttaaaccactcaacta 32914484  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 27442934 - 27442880
Alignment:
Q  344 agataaagtgtttaatggtattgatgttgacaccgtagaaaactttagagatttc 398  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||| |||| |||||    
T  27442934 agataaagtgtctaatggtattgatattgacaccgcagaaaactgtagaaatttc 27442880  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 40095864 - 40095816
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||| |||||||| || ||||||||||||||||||||| |||||||||    
T  40095864 aatatattatattactttacacttctcaattatttaaactactcaacta 40095816  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 7395498 - 7395460
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaac 73  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  7395498 aatattttatattacttcacacttttcaattatttaaac 7395460  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 13081187 - 13081147
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaa 75  Q
    |||||||||| ||| |||||| |||||||||||||||||||    
T  13081187 aatattttatgttatttcacatttctcaattatttaaacaa 13081147  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 29634264 - 29634176
Alignment:
Q  309 tgaaagcatgcaaaattaaatgcagaaatcaaaatagataaagtgtttaatggtattgatgttgacaccgtagaaaactttagagattt 397  Q
    |||||||||  |||||||||||||||||| |  ||||| |||||||||||| |||||||| ||||||| | | |||||| || ||||||    
T  29634264 tgaaagcatagaaaattaaatgcagaaattaggatagaaaaagtgtttaatagtattgattttgacactgcaaaaaactgtatagattt 29634176  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 50428564 - 50428501
Alignment:
Q  22 atggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    ||||| ||||| |||||  |||||||| |||||||||||||||||||||||  |||||||||||    
T  50428564 atggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaactata 50428501  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 46823705 - 46823657
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||| ||||||||| ||||||||| |||||||||||||| |||||||||    
T  46823705 aatactttatattacttcacacttttcaattatttaaaccactcaacta 46823657  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 1035776 - 1035819
Alignment:
Q  42 tatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||    
T  1035776 tatattatttcacacttctcaattatttaaaccactaaactata 1035819  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 37457655 - 37457698
Alignment:
Q  42 tatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||    
T  37457655 tatattatttcacacttctcaattattaaaaccactcaactata 37457698  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 23571074 - 23571030
Alignment:
Q  41 ttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||| |||||| || || |||||||||||||||||||||||    
T  23571074 ttatattacttcacatttttccattatttaaacaactcaactata 23571030  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 51613279 - 51613327
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||| ||||||||| |||||||||  ||||||||||||| |||||||||    
T  51613279 aataatttatattacttcacactttccaattatttaaaccactcaacta 51613327  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 56661 - 56613
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||| |||||||| || ||||||||||||||||||||| |||||||||    
T  56661 aatatattatattactttacacttctcaattatttaaaccactcaacta 56613  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 9682433 - 9682385
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||| ||||||||| ||||||||| |||||||||||||| |||||||||    
T  9682433 aatactttatattacttcacacttttcaattatttaaaccactcaacta 9682385  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 17312925 - 17312877
Alignment:
Q  35 aatattttatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    |||| ||||||||| ||||||||| |||||||||||||| |||||||||    
T  17312925 aatactttatattacttcacacttttcaattatttaaaccactcaacta 17312877  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 2907776 - 2907841
Alignment:
Q  17 catatatggacctcactcaatattttatattaattcacacttctcaattatttaaacaactcaact 82  Q
    |||| |||||||  || |||||||||| |||| |||||| |||  |||||||||||||||||||||    
T  2907776 cataaatggaccctacacaatattttacattacttcacatttcctaattatttaaacaactcaact 2907841  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 4925098 - 4925139
Alignment:
Q  42 tatattaattcacacttctcaattatttaaacaactcaacta 83  Q
    ||||||| ||||||||| |||||||||||||| |||||||||    
T  4925098 tatattacttcacacttttcaattatttaaaccactcaacta 4925139  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 39060227 - 39060271
Alignment:
Q  41 ttatattaattcacacttctcaattatttaaacaactcaactata 85  Q
    |||||||| ||||||||| || ||||||||||| |||||||||||    
T  39060227 ttatattacttcacacttttcgattatttaaaccactcaactata 39060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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