View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_high_22 (Length: 326)
Name: NF20884_high_22
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 5445566 - 5445264
Alignment:
| Q |
6 |
aggagcagagataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttagacaacaccatggaagatatctcttgaggtgaa |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445566 |
aggaacagtgataacagcattgttcacttcatgacccaaataagtttcagcaacttcctttaacttagacaacaccatggaagatatctcttgaggtgaa |
5445467 |
T |
|
| Q |
106 |
aaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtggttcggaacaactttaaaaggccaaagctttatgtcttgttggactg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445466 |
aaatgtttctcttggcctttgtaattgacaacaatcatgggtttgtctttgtggttcggaacaactttaaaaggccaaagctttatgtcttgttggactg |
5445367 |
T |
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| Q |
206 |
tttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgtggggatttttggctaattggtttttggcagcatcgcctattaatct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5445366 |
tttggtcagagaatcgacggccaatcagacgtttggcatcaaaaacagtgttgtggggatatttggctaattggtttttggcagcatcgcctattaatct |
5445267 |
T |
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| Q |
306 |
ttc |
308 |
Q |
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||| |
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| T |
5445266 |
ttc |
5445264 |
T |
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