View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20884_high_23 (Length: 297)
Name: NF20884_high_23
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_high_23 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 16149707 - 16149879
Alignment:
| Q |
10 |
aacaatattgtccttccgtgattgtcgattccaacaaaaatgccaaaaggcatattataaaaattcaccctgtaggtattatcaaatgcaacaacatctc |
109 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||| ||| |||||||||||||| |||||| |
|
|
| T |
16149707 |
aacaatattgttctgccgtgattgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctc |
16149806 |
T |
|
| Q |
110 |
catactcttggtacaactcaaagcaatgaggtggagaccaaaatatattctctagtcttttttctttatcaac |
182 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16149807 |
catactgttggtacaattcaaaacaatgaggtggagaccaaaatatattttctagtcttttttctttatcaac |
16149879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 16150105 - 16150199
Alignment:
| Q |
200 |
cttctcatcttcctcagaaatgttgcggtaaaatgcaaggaagcgcacttgatctggaggtagtaaatcatgattgtggttggatttaagttcaa |
294 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
16150105 |
cttctcttcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaattcaa |
16150199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 4652322 - 4652480
Alignment:
| Q |
30 |
attgtcgattccaacaaaaatgccaaaaggcatattataaaaattcaccctgtaggtattatcaaatgcaacaacatctccatactcttggtacaactca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||| |||| || | |||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
4652322 |
attgtcgattccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccattacgttggtacaattca |
4652421 |
T |
|
| Q |
130 |
aagc-----aatgaggtggagaccaaaatatattctctagtcttttttctttatcaaca |
183 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4652422 |
aaacaatataatgatgtggagaccaaaatatattttctagtcttttttctttatcaaca |
4652480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 4652712 - 4652801
Alignment:
| Q |
207 |
tcttcctcagaaatgttgcggtaaaatgcaaggaagcgcacttgatctggaggtagtaaatcatgattgtggttggatttaagttcaata |
296 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||| ||||| ||| ||||||| |
|
|
| T |
4652712 |
tcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaattatgattgtggctggatataaattcaata |
4652801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 23302206 - 23302109
Alignment:
| Q |
200 |
cttctcatcttcctcagaaatgttgcggtaaaatgcaaggaagcgcacttgatctggaggtagtaaatcatgattgtggttggatttaagttcaataa |
297 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
23302206 |
cttctcttcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaattcaataa |
23302109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 23302352 - 23302268
Alignment:
| Q |
10 |
aacaatattgtccttccgtgattgtcgattccaacaaaaatgccaaaaggcatattataaaaattcaccctgtaggtattatcaa |
94 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||| ||| ||| |||| ||| |||||| |
|
|
| T |
23302352 |
aacaatattgttctgccgtgattgtcgattacaacaaagatgccaaaaggcatattataagtatttaccttgtaagtagtatcaa |
23302268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University