View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_high_29 (Length: 273)
Name: NF20884_high_29
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_high_29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 24877753 - 24877490
Alignment:
| Q |
10 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24877753 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
24877654 |
T |
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| Q |
110 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactatagcagaagataaggaaaacatgaaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24877653 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaa |
24877554 |
T |
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| Q |
210 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatt |
273 |
Q |
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| T |
24877553 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtctagacatt |
24877490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 14089023 - 14088760
Alignment:
| Q |
10 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
109 |
Q |
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| T |
14089023 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
14088924 |
T |
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| Q |
110 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactatagcagaagataaggaaaacatgaaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14088923 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaa |
14088824 |
T |
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| Q |
210 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14088823 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtctagacatt |
14088760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 33697672 - 33697935
Alignment:
| Q |
10 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697672 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
33697771 |
T |
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| Q |
110 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactatagcagaagataaggaaaacatgaaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33697772 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactaaagcagaagataaggaaaacatgaaaaa |
33697871 |
T |
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| Q |
210 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatt |
273 |
Q |
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| T |
33697872 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtcaagacatt |
33697935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 46457462 - 46457725
Alignment:
| Q |
10 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
46457462 |
aagaaaatactgggtatggagattagtagagagaggacaaactagaaactgttcttgagtcaaaaaggctatttatagcgggttgttgaaaggtttgtaa |
46457561 |
T |
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| Q |
110 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactatagcagaagataaggaaaacatgaaaaa |
209 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46457562 |
tgtaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactaaagcagaagataaggaaaacatgaaaaa |
46457661 |
T |
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| Q |
210 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatt |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46457662 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatt |
46457725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 9952758 - 9953021
Alignment:
| Q |
10 |
aagaaaatactgggtatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
9952758 |
aagaaaatactgggtatggagattagtagagagaggacaaaccagaaactattcttgagtcaaaaaggctatttagagcgggttttcgaaaggtttggaa |
9952857 |
T |
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| Q |
110 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttctggtaatcagtctcccactatagcagaagataaggaaaacatgaaaaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
9952858 |
tgaaaggttctaagtcggtggttactccattagctccacattttagactttttggtaattagtctcccactacagcagaagataaggaaaacatgaaaaa |
9952957 |
T |
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| Q |
210 |
tgtaccttatgctagtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatt |
273 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
9952958 |
tgtaccttatgctagtgcagttggtagtttaatgtatgctatggtgtgtacacgtccacacatt |
9953021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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