View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20884_high_3 (Length: 625)
Name: NF20884_high_3
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_high_3 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 394 - 625
Target Start/End: Original strand, 5017200 - 5017431
Alignment:
| Q |
394 |
ttacatttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
493 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5017200 |
ttacagttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
5017299 |
T |
|
| Q |
494 |
acagcaacagtagtagtaattcttcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcagtggccttgttttcctcagactgccac |
593 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5017300 |
acagcaacagtagtagtaattattcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcattggccttgttttcctcagactgccac |
5017399 |
T |
|
| Q |
594 |
tcaagcaccatggcagcagcagttaccatatc |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5017400 |
tcaagcaccatggcagcagcagttaccatatc |
5017431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 5016400 - 5016609
Alignment:
| Q |
1 |
cgtttggactttggtcaaaacccgtaatgcttgaattcacagtttgcaaccaattggctatacttcactctaggttataattgtaacactcgtaccttat |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5016400 |
cgtttggactttggtcaaaaccctta-tgcttgaattcacagtttgccaccaattggctatacttcactctaggttatagttgtaacactcgtaccttat |
5016498 |
T |
|
| Q |
101 |
atgaatatccctcactatggaaatcaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttcaatc |
200 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5016499 |
acgaatatccctcactatggaaaccaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttctaccaatatgttcaatt |
5016598 |
T |
|
| Q |
201 |
ttctatttctt |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
5016599 |
ttctatttctt |
5016609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 252 - 398
Target Start/End: Original strand, 5016606 - 5016750
Alignment:
| Q |
252 |
tcttcgctttctccttcgttttagctttgttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttattaaaaataacttt |
351 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5016606 |
tcttcgctttctccttcgttttagctt-gttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttatt-aaaataacttt |
5016703 |
T |
|
| Q |
352 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5016704 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
5016750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 5005292 - 5005339
Alignment:
| Q |
424 |
ttttcattttattaagatgaatatgattaacagaacaagcaagacaaa |
471 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
5005292 |
ttttcatttgattaagatgaatatgattagcagaacacgcaggacaaa |
5005339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University