View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_high_33 (Length: 261)
Name: NF20884_high_33
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 40436627 - 40436453
Alignment:
| Q |
8 |
cagcacagaattaacatctatattaacatgcatttagcatgggacacttgaagaacgacgattccatattcacacacacaaaaggaatgagaatata--t |
105 |
Q |
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| T |
40436627 |
cagcacagaattaacatctatattaacatgcatttagcatgggacacttgaagaacgacgattccatattcacacacacagaaggaatgagaatatatat |
40436528 |
T |
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| Q |
106 |
ataatgcaagtacctatttattttagactatggaatggataaaagcatctatccaccacgcgagatgtgatagcg |
180 |
Q |
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| T |
40436527 |
ataatgcaagtacctatttattttagactatggaatggataaaagcatctatccaccacgcgagatgtgatagcg |
40436453 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 40427901 - 40427840
Alignment:
| Q |
60 |
gaacgacgattccatattcacacacacaaaa-ggaatgagaatatatataatgcaagtacct |
120 |
Q |
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| T |
40427901 |
gaacaacgattccatattcacatacacaaaagggaatgagattacatatcatgcaagtacct |
40427840 |
T |
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