View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20884_low_1 (Length: 820)

Name: NF20884_low_1
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20884_low_1
NF20884_low_1
[»] chr5 (10 HSPs)
chr5 (89-193)||(16022274-16022378)
chr5 (80-193)||(14389758-14389871)
chr5 (146-216)||(14368549-14368619)
chr5 (253-321)||(14368613-14368681)
chr5 (189-254)||(13852950-13853015)
chr5 (77-127)||(13881418-13881468)
chr5 (190-255)||(14398108-14398173)
chr5 (190-254)||(13883392-13883456)
chr5 (190-251)||(14391953-14392014)
chr5 (76-123)||(13856742-13856789)
[»] chr1 (1 HSPs)
chr1 (536-568)||(8463143-8463175)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 2e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 16022378 - 16022274
Alignment:
Q  89 tagtgttatatgttctgtaacatggtttatttcatcgcatacaccaaaaccaaaaatactttctattcaactcatggattgtggaaatgataagcatgaa 188  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||||    
T  16022378 tagtgttatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaactcatggactgtggaaatgagaagcatgaa 16022279  T
Q  189 atgac 193  Q
     ||||    
T  16022278 gtgac 16022274  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 14389758 - 14389871
Alignment:
Q  80 agttttaagtagtgttatatgttctgtaacatggtttatttcatcgcatacaccaaaaccaaaaatactttctattcaactcatggattgtggaaatgat 179  Q
    ||||||||| ||||||||||||| ||||||||||||||||| || |||  ||||||||||||| | ||||||||||||| |||| |||| |||||||||     
T  14389758 agttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattcaattcattgattttggaaatgaa 14389857  T
Q  180 aagcatgaaatgac 193  Q
    ||||||||| ||||    
T  14389858 aagcatgaagtgac 14389871  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 14368549 - 14368619
Alignment:
Q  146 actttctattcaactcatggattgtggaaatgataagcatgaaatgacaccaaacttgcattgaaacagat 216  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  14368549 actttccattcaactcatggattgtggaaatgataagcttgaaatgacaccaaacttacattgaaacagat 14368619  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 14368613 - 14368681
Alignment:
Q  253 aacagatactaatttaataacataagatccatgataaccacaaagcatctaactcttaagtgttggaaa 321  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  14368613 aacagatactaatttaataacacaagaaccatgataaccacaaagcatctaactattaagtgttggaaa 14368681  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 13853015 - 13852950
Alignment:
Q  189 atgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttgtaa 254  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||    
T  13853015 atgacaccaaacttgcattcaaacagatgcagaacacatactttcactataggtcaattgttgtaa 13852950  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 13881468 - 13881418
Alignment:
Q  77 tggagttttaagtagtgttatatgttctgtaacatggtttatttcatcgca 127  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  13881468 tggagttttaagtagtgttatatgttttgtaacatggtttatttcctcgca 13881418  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 14398108 - 14398173
Alignment:
Q  190 tgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttgtaac 255  Q
    |||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||  |||||||    
T  14398108 tgacaccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaattcttgtaac 14398173  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 13883456 - 13883392
Alignment:
Q  190 tgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttgtaa 254  Q
    |||||||||||||||||| ||||||||| | |||||||||||| ||||||| ||||| |||||||    
T  13883456 tgacaccaaacttgcattcaaacagatgaagaacacatactttgactagagatcaattgttgtaa 13883392  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 14391953 - 14392014
Alignment:
Q  190 tgacaccaaacttgcattgaaacagatgcataacacatactttcactagaggtcaatggttg 251  Q
    |||||||||| ||||||| ||||||||||| ||||||| |||||||  ||||||||| ||||    
T  14391953 tgacaccaaaattgcattcaaacagatgcagaacacatgctttcacccgaggtcaattgttg 14392014  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 13856789 - 13856742
Alignment:
Q  76 atggagttttaagtagtgttatatgttctgtaacatggtttatttcat 123  Q
    ||||| ||||||| |||||||||||||  |||||||||||||||||||    
T  13856789 atggaattttaaggagtgttatatgtttggtaacatggtttatttcat 13856742  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 536 - 568
Target Start/End: Complemental strand, 8463175 - 8463143
Alignment:
Q  536 acgggtatgcttgtgtttcgtcattagtatatg 568  Q
    |||||||||||||||||||||||||||||||||    
T  8463175 acgggtatgcttgtgtttcgtcattagtatatg 8463143  T

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