View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_14 (Length: 356)
Name: NF20884_low_14
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 10602298 - 10601942
Alignment:
| Q |
1 |
gtgcattgtgattgatggagtgaataatcaaaattttggcacttagctcgtttaaatgaagnnnnnnnnnn-tcaatgattaaataatttaattacattc |
99 |
Q |
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| T |
10602298 |
gtgcattgtggttgatggagtgaataatcaaaattttggcacttagctcatttaaatgaagaaaaaaaaaaatcaatgattaaataatttaattacattc |
10602199 |
T |
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| Q |
100 |
atgattttttatacatgtacatgtgacatcaattttcttatcctctaatgtgactttctcatttcaaaagaattactaaaactatgcttgaaatctttaa |
199 |
Q |
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| T |
10602198 |
atgattttttatacatgtacatgtgacatcaattttcttatcctctaatgtgtctttctcatttcaaa-gaattactaaaactatgcttgaaatctttaa |
10602100 |
T |
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| Q |
200 |
atgtaaattaatgctcaagtaagatttt-ataggcttaattaagttcatcaataaaatccacaatgaatttgaagacaaatcatgccaaataaatttttc |
298 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10602099 |
atgtaaattaatgctcaagtaagatttttataggattaattcagttcatcaataaaatacacaatgaatttgaagacaaatcatgccaaataaatttttc |
10602000 |
T |
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| Q |
299 |
atgcttatgagattaattagaaaagttatcttctaaactcaataggaacaatagtagc |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10601999 |
atgcttatgagattaattagaaaagttatcttctaaactcaataggaacaatagtagc |
10601942 |
T |
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