View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_16 (Length: 352)
Name: NF20884_low_16
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 29181306 - 29180973
Alignment:
| Q |
1 |
acaatcctccactgctaccacgaccaccaccaccgcaacggaaaatcgatccaataaagaaaacaacactacaattgatgacaaattgattgaaaattcc |
100 |
Q |
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| T |
29181306 |
acaatcctccactgctaccacgaccaccaccaccgcaacggaaaatcgacccaataaagaaaacaacactacaattgatgacaaattgattgaaaattcc |
29181207 |
T |
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| Q |
101 |
aacgatgcaaatgcacttcggtctttgattgaggaaaacgtgaaagcacgcaaactaagcgaagcgattcgcgctgtggaacgattaatggaacttgaac |
200 |
Q |
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| T |
29181206 |
aacgatgcaaatgcacttcggtctttgattgaggaaaacgtgaaagcacgcaaactaagcgaagctattcgcgctgtggaacgattaatggaacttgaac |
29181107 |
T |
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| Q |
201 |
cggaggaatttgatttgttgctactaaaatcacatttgcatagtcataacggtgaacatgaattagctaagaaaggatttgaatttactctgcagcaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29181106 |
cggaggaatttgatttgttgctactaaaatcacatttgcatagtcataacggtgaacatgaattagctaagaaaggatttgaatttactctgcagcaaga |
29181007 |
T |
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| Q |
301 |
tccgtttaattcggaagcttatcgcggtcttttg |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29181006 |
tccgtttaattcggaagcttatcgcggtcttttg |
29180973 |
T |
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