View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_17 (Length: 349)
Name: NF20884_low_17
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 14754678 - 14754330
Alignment:
| Q |
1 |
cgtttttgcggtggtttgattttggtggacatgagaaaagtatgaaggagaattttaaggagttggatactgttgtgacagagtggttgaaagagcacaa |
100 |
Q |
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| T |
14754678 |
cgtttttgcggtggtttgattttggtggacatgagaaaagtatgaaggagaattttaaggagttggatactgttgtgacagagtggttgaatgagcacaa |
14754579 |
T |
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| Q |
101 |
gaagaaaagggataatggtggcgatgataagagtaaaggggatcaagattttatcgatgttatgctttctacaatcgatggaacaaacattcatgggttt |
200 |
Q |
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| T |
14754578 |
gaataaaagggaagatggtggtgatgataagagtaaaggggatcatgattttattgatgttatgctttctacaatcgacggaacaaacattcatgggttt |
14754479 |
T |
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| Q |
201 |
gattcggatactatcatcaaagccacaacaatggtatgtgtatatagtattatcacatgcaaatatac----atagtgtcgttatttaattacacttttg |
296 |
Q |
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| T |
14754478 |
gattcggatactatcatcaaagccacaacaatggtatgtgtatatagtattatcacatgcaaatatacatagatagtgtcgttatttaattgcacttttg |
14754379 |
T |
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| Q |
297 |
gtattcgtattttatcagaacgatattgaattcgtcagaataatctacc |
345 |
Q |
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| T |
14754378 |
gtattcgtattttatcagaacggtattgaatttgtcagactaatttacc |
14754330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 14714238 - 14714004
Alignment:
| Q |
3 |
tttttgcggtggtttgattttggtggacatgagaaaagtatgaaggagaattttaaggagttggatactgttgtgacagagtggttgaaagagcacaaga |
102 |
Q |
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|||||| |||||||||||||||||||||||||||| | ||||||| | |||||||||||||||||| |||| | |||||||||||| | |||||||||| |
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| T |
14714238 |
tttttgaggtggtttgattttggtggacatgagaagaatatgaagcaaaattttaaggagttggatggtgttatcacagagtggttggatgagcacaaga |
14714139 |
T |
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| Q |
103 |
agaaaagggataatggtggcgatgataagagtaaaggggatcaagattttatcgatgttatgctttctacaatcgatggaacaaacattcatgggtttga |
202 |
Q |
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| T |
14714138 |
agaagaagagtgaaggtgt---tgataagagtaaagagggtcaagatttcatggatgtgatgctttctactattgatggaacaaacattcatgggtttca |
14714042 |
T |
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| Q |
203 |
ttcggatactatcatcaaagccacaacaatggtatgtg |
240 |
Q |
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| T |
14714041 |
ttcggatactgtcatcaaagccacaacaatggtatgtg |
14714004 |
T |
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Back To:
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