View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_19 (Length: 339)
Name: NF20884_low_19
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 36187187 - 36187319
Alignment:
| Q |
13 |
aatattatgtagagtaaatgcccaataatatatattctgaaaaatacagctatatatagttgactatggtgtcaacgcccatgttgtacacattacctag |
112 |
Q |
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| T |
36187187 |
aatattatgcagagtaaatgcccaataatatttcgacggaaaaatacagctatatatagttgaccatggtgtcaacgcccatgttgtacacattacctag |
36187286 |
T |
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| Q |
113 |
ttaatatcattatgctataagatcttaattaat |
145 |
Q |
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| T |
36187287 |
ttagtatcattatggtataagatcttaattaat |
36187319 |
T |
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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 320
Target Start/End: Original strand, 36187617 - 36187808
Alignment:
| Q |
146 |
gtatttcggatgaaccctccctgttaaagatggtacgtactgaaagagaggtgtatagtttttccgtttacgtcatt------------------gatat |
227 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
36187617 |
gtatttcggatgaaccctccttgttgaagatggtacgtactgaaagagaggtgtatagtttttccgtttatgtcattggttatgttgacagcttggatat |
36187716 |
T |
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| Q |
228 |
tgtatcctgaaagagaggtatagtgtgtacttataatattaagacgcaacatgacattttcttttggggacgtagtggtacacatttttaaat |
320 |
Q |
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| T |
36187717 |
tgtatcctgaaagagaggtatagtgtgtacttataatattaagacacaacttgaca-tttgttatggggaagtagtggttcacatttttaaat |
36187808 |
T |
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