View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_22 (Length: 326)
Name: NF20884_low_22
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 19857592 - 19857848
Alignment:
| Q |
1 |
aaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagaatgttggcggggttagt |
100 |
Q |
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| T |
19857592 |
aaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagagtgttggcggggttagt |
19857691 |
T |
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| Q |
101 |
tactagttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggaggaaaa |
200 |
Q |
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| T |
19857692 |
tactggttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaataaaggaggaaaa |
19857791 |
T |
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| Q |
201 |
ctttatgagtaattataaagttaatggaaatgtgacagacagtgttttattactatg |
257 |
Q |
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| T |
19857792 |
ctttacgagtaattataaagttaatggaaatgtgacagagaggcttttattactatg |
19857848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 19857886 - 19857934
Alignment:
| Q |
260 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttg |
308 |
Q |
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| T |
19857886 |
agctcgagggtcgaacaatatcagtttcggtttttgaaaatagagtttg |
19857934 |
T |
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