View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20884_low_26 (Length: 290)

Name: NF20884_low_26
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20884_low_26
NF20884_low_26
[»] chr5 (1 HSPs)
chr5 (6-290)||(2892307-2892591)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 2892591 - 2892307
Alignment:
Q  6 atggacatcatcatgaaaacaaatctctcaatcttccttctcatagccataacatccatagctgcagcacaagcaggaagattcaatatcacaaacaaat 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892591 atggccatcatcatgaaaacaaatctctcaatcttccttctcatagccataacatccatagctgcagcacaagcaggaagattcaatatcacaaacaaat 2892492  T
Q  106 gcaactacaccgtatgggctgcagccttccccggtggtggcatgaaactcaacaccggtgaatcatggaacatgaacataaccaacggtacaagtaacgc 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892491 gcaactacaccgtatgggctgcagccttccccggtggcggcatgaaactcaacaccggtgaatcatggaacatgaacataaccaacggtacaagtaacgc 2892392  T
Q  206 aagaatctggggtcgaaccaattgcactttcgacaattcaggtctcggaaagtgtcaaaccggtgattgcaatgggacactagag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2892391 aagaatctggggtcgaaccaattgcactttcgacaattcaggtctcggaaagtgtcaaaccggtgattgcaatgggacactagag 2892307  T

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