View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_28 (Length: 282)
Name: NF20884_low_28
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_28 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 24877217 - 24877480
Alignment:
| Q |
19 |
cgtattagatagtgccactgtagactgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgacatctatct |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
24877217 |
cgtagtagatagtgccactgtagactgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgtcgtctatct |
24877316 |
T |
|
| Q |
119 |
agatcaccagcataatctgaatcaacaaagccacttatttgacatgtttctccaccaaaacacaaaccagtgttaatggtaccttttaagtaccttaaaa |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24877317 |
agatcaccagcataatccgaatcaacaaagccacttatttgacatgtagctccaccaaaacacaaaccagtgttaatggtaccttttaagtacctcaaaa |
24877416 |
T |
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| Q |
219 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatcaatctactaacaacacttac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24877417 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatgaatctactaacaacacttac |
24877480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 24594794 - 24594855
Alignment:
| Q |
84 |
tgaacacataaccagtagtagaccgacatctatctagatcaccagcataatctgaatcaaca |
145 |
Q |
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|||||||||||||||||||||| | | | |||| |||||||| ||| |||||||||||||| |
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| T |
24594794 |
tgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaaca |
24594855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 14088487 - 14088750
Alignment:
| Q |
19 |
cgtattagatagtgccactgtagactgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgacatctatct |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
14088487 |
cgtagtagatagtgccactgtagactgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgtcgtctatct |
14088586 |
T |
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| Q |
119 |
agatcaccagcataatctgaatcaacaaagccacttatttgacatgtttctccaccaaaacacaaaccagtgttaatggtaccttttaagtaccttaaaa |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
14088587 |
agatcaccagcataatccgaatcaacaaagccacttatttgacatgtatctccaccaaaacacaaaccagtgttaatggtaccatttaagtacctcaaaa |
14088686 |
T |
|
| Q |
219 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatcaatctactaacaacacttac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14088687 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatgaatctactaacaacacttac |
14088750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 1472767 - 1472828
Alignment:
| Q |
84 |
tgaacacataaccagtagtagaccgacatctatctagatcaccagcataatctgaatcaaca |
145 |
Q |
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|||||||||||||||||||||| | | | |||| |||||||| ||| |||||||||||||| |
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| T |
1472767 |
tgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaaca |
1472828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 33698208 - 33697945
Alignment:
| Q |
19 |
cgtattagatagtgccactgtagactgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgacatctatct |
118 |
Q |
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|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
33698208 |
cgtagtagatagtgccactgtagattgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgtcgtctatct |
33698109 |
T |
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| Q |
119 |
agatcaccagcataatctgaatcaacaaagccacttatttgacatgtttctccaccaaaacacaaaccagtgttaatggtaccttttaagtaccttaaaa |
218 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33698108 |
agatcaccagcataatccgaatcaacaaagccacttatttgacatgtatctccaccaaaacacaaaccagtgttaatggtaccttttaagtacctcaaaa |
33698009 |
T |
|
| Q |
219 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatcaatctactaacaacacttac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33698008 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatgaatctactaacaacacttac |
33697945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 46457998 - 46457735
Alignment:
| Q |
19 |
cgtattagatagtgccactgtagactgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgacatctatct |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
46457998 |
cgtagtagatagtgccactgtagactgtaacattgatcgccaacttactggagcactgtgtattttgaacacataaccagtagtagaccgtcgtctatct |
46457899 |
T |
|
| Q |
119 |
agatcaccagcataatctgaatcaacaaagccacttatttgacatgtttctccaccaaaacacaaaccagtgttaatggtaccttttaagtaccttaaaa |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46457898 |
agatcaccagcataatccgaatcaacaaagccacttatttgacatgtatctccaccaaaacacaaaccagtgttaatggtaccttttaagtacctcaaaa |
46457799 |
T |
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| Q |
219 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatcaatctactaacaacacttac |
282 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46457798 |
tccatttcactgcttctcagtgtgcctttcctggatttgccatgaatctactaacaacacttac |
46457735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 9953293 - 9953031
Alignment:
| Q |
19 |
cgtattagatagtgccactgtagactgtaacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtagaccgacatctatct |
118 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
9953293 |
cgtagtagatagtgccactgtagactataacattgatcgccaacttactggagcaccgtgtattttgaacacataaccagtagtacaccgtcgtctatct |
9953194 |
T |
|
| Q |
119 |
agatcaccagcataatctgaatcaacaaagccacttatttgacatgtttctccaccaaaacacaaaccagtgttaatggtaccttttaagtaccttaaaa |
218 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9953193 |
agattaccagcataatccgaatcaacaaagccacttaattgacatg-atctccaccaaaacacaaaccagtgttaatggtaccttttaagtacctcaaaa |
9953095 |
T |
|
| Q |
219 |
tccatttcactgcttcccagtgtgcctttcctggatttgccatcaatctactaacaacacttac |
282 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
9953094 |
tccatttcactgcttccaagtgtgcctttcctagatttgccatgaatctactaacaacacttac |
9953031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 7505066 - 7505127
Alignment:
| Q |
84 |
tgaacacataaccagtagtagaccgacatctatctagatcaccagcataatctgaatcaaca |
145 |
Q |
| |
|
|||||||||||||||||||||| | | | |||| |||||||| ||| |||||||||||||| |
|
|
| T |
7505066 |
tgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaaca |
7505127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 2002897 - 2002836
Alignment:
| Q |
84 |
tgaacacataaccagtagtagaccgacatctatctagatcaccagcataatctgaatcaaca |
145 |
Q |
| |
|
|||||||||||||||||||||| | | | |||| |||||||| ||| |||||||||||||| |
|
|
| T |
2002897 |
tgaacacataaccagtagtagatcttcttttatcaagatcacctgcaaaatctgaatcaaca |
2002836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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