View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_31 (Length: 267)
Name: NF20884_low_31
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 39211236 - 39211477
Alignment:
| Q |
10 |
attattctcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgtt |
109 |
Q |
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| T |
39211236 |
attattctcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgtt |
39211335 |
T |
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| Q |
110 |
acaattaagaacatgtgttaattgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccac |
209 |
Q |
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| T |
39211336 |
acaattaagaacatgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatttatgctatcagctatatagtttttccac |
39211435 |
T |
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| Q |
210 |
tgcaacatctgttgtcaagattcaattagacatagtgaaatt |
251 |
Q |
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| T |
39211436 |
tgcaacatctgttgtcaagattcaattagacatagtgaaatt |
39211477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 27509697 - 27509463
Alignment:
| Q |
17 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaatta |
116 |
Q |
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| T |
27509697 |
tcccttatgaactttttcaattctttgcatataagaaaaatagtgcttcagttatgtacttcataagctatcaattttcatcctgcatctgttacaatta |
27509598 |
T |
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| Q |
117 |
agaacatgtgttaattgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactgcaaca |
216 |
Q |
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| T |
27509597 |
agaacatgtgtcaattgccctgcagctgttacatccaatttaagtagaaaaaaatgaaacaaatttatactatcagttatatagtttttcccctgcaaca |
27509498 |
T |
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| Q |
217 |
tctgttgtcaagattcaattagacatagtgaaatt |
251 |
Q |
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| T |
27509497 |
tctgttgtcaagattcaattagacatagtgaaatt |
27509463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 27271710 - 27271947
Alignment:
| Q |
17 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaat |
114 |
Q |
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||||||||||||||||| ||||||||||||| |||||| ||| || ||| ||||||| ||| ||||||||||||||||| || ||||||||||||||| |
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| T |
27271710 |
tcccttatgaactttttaaattctttgcatacaagaaactcagcgcctcaattatgtatttcttaagctatcaattttcagttcttgcatctgttacaat |
27271809 |
T |
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| Q |
115 |
taagaacatg-tgttaat--tgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactg |
211 |
Q |
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| T |
27271810 |
taagatgatgatgacaaacattcactgcagctgttacatccaatttaggtagaaaaaa-tgaaacatatttatactatcagctatatagtttttccactg |
27271908 |
T |
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| Q |
212 |
caacatctgttgtcaagattcaattagacatagtgaaat |
250 |
Q |
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| T |
27271909 |
caacatctgttgtgaagattcaattagacacagtgaaat |
27271947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 42093236 - 42092998
Alignment:
| Q |
17 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaat |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||||||| | || ||||| ||||||||| |
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| T |
42093236 |
tcccttatgaactttctcaattctttgcatataagaaaaatagtgcttcaattatgtacttcaaatgctatcaattttgagttcatgcatatgttacaat |
42093137 |
T |
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| Q |
115 |
taagaacat--gtgttaattgccctgcagctgttacatccaatttaagta-gnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactg |
211 |
Q |
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|| | |||| || | |||||||||| ||||||||||||||||| |||| | |||||||||||||| ||||||| |||||||||||||||| |
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| T |
42093136 |
taggcacatgagtatcaattgccctgtggctgttacatccaatttcagtaggaaaaaaatgaaacaaatttataccatcagctttatagtttttccactg |
42093037 |
T |
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| Q |
212 |
caacatctgttgtcaagattcaattagacatagtgaaat |
250 |
Q |
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|| || ||||||||||||||||||| |||||||||||| |
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| T |
42093036 |
cagcacatgttgtcaagattcaattaaacatagtgaaat |
42092998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 29707147 - 29706910
Alignment:
| Q |
17 |
tcccttatgaactttttcaattctttgcatataagaaaaacagtgcttcagttatgtacttcataagctatcaattttca--tcctgcatctgttacaat |
114 |
Q |
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||||||||||||||||| ||||||||||||| |||||| || || ||| ||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
29707147 |
tcccttatgaactttttaaattctttgcatacaagaaacttagcgcctcaattatgtacttcttaagctatcaattttcagttcttgcatctgttacaat |
29707048 |
T |
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| Q |
115 |
taagaacatg-tgttaat--tgccctgcagctgttacatccaatttaagtagnnnnnnntgaaacaaatttatgatatcagctatatagtttttccactg |
211 |
Q |
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|||||| ||| || || | | |||||| ||||||||| |||||| |||| | ||||| |||||| ||||||||||||||||||||||||| |
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| T |
29707047 |
taagaagatgatgaaaaacattcactgcagttgttacatctaatttaggtagaaaaaatt-aaacatatttatactatcagctatatagtttttccactg |
29706949 |
T |
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| Q |
212 |
caacatctgttgtcaagattcaattagacatagtgaaat |
250 |
Q |
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||||||||||||| |||||||||||||||| |||||||| |
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| T |
29706948 |
caacatctgttgtgaagattcaattagacacagtgaaat |
29706910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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