View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20884_low_32 (Length: 264)
Name: NF20884_low_32
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 1810586 - 1810348
Alignment:
| Q |
9 |
catcatcaaaatattggagatatgtattggattgagaaaagatgaggcgagcaatgcgaggatcataatccatcaactccgcgaagctgaaa-aatagat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1810586 |
catcatcaaaatattggagatatgtattggattgagaaaagatgaggcgagcaatgcgaggatcataatccatcaactccgcgaagctgaaacaatagat |
1810487 |
T |
|
| Q |
108 |
agatagatagaaaagagttagaattagggttagggttgataataaagaagatgaagaggaataatacagactcgatgtggagaggaaaatgaagactgga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1810486 |
agatagatagaaaagagttagaattagggtgaggattgataataaagaagatgaagaggaataatacagactcgatgtggagaggaaaatgaagactgga |
1810387 |
T |
|
| Q |
208 |
atcgggagaagaagcgatggatcgaagttgatcgtcgta |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1810386 |
atcgggagaagaagcgatggatcgaagttgatcgtcgta |
1810348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University