View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_33 (Length: 261)
Name: NF20884_low_33
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 39151138 - 39150910
Alignment:
| Q |
2 |
atgataaaaaataattgttggaaacccaaaatttcatcccgtatggtatcatatggcatactatatatatat----gtacaagctacaactaagttcaaa |
97 |
Q |
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| T |
39151138 |
atgataaataataattgttggaaacccaaaatttcatcccgtatggtatcatatggcatactatatatatatatatgtacaagctacaactaagttcaaa |
39151039 |
T |
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| Q |
98 |
agatcatgaacacttgttgagtgagcatgtatattcaatttgagtatagctagaaaggtgcagatgctatgtccctgaatgcttctagtgatgcttcttg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39151038 |
agatcatgaacacttgttgagtgagcatgtatattcaatttgagtatagctagaaaggtgcagatgctatgtccctgaatgc------------ttcttg |
39150951 |
T |
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| Q |
198 |
ggggattagctccaattcttcacccaaatccatgttaccgg |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
39150950 |
ggggattagctccaattcttcacccaaatccatgttaccgg |
39150910 |
T |
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