View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_37 (Length: 253)
Name: NF20884_low_37
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_37 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 253
Target Start/End: Complemental strand, 27510189 - 27509944
Alignment:
| Q |
6 |
aggagcagagatcaaattaggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctcca |
105 |
Q |
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| T |
27510189 |
aggagcaaagatcaaattaggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctcca |
27510090 |
T |
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| Q |
106 |
tctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctagaagaattagtaatattaattatgccgcttcatattttttgttttca |
205 |
Q |
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| T |
27510089 |
tctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattagtaatattaattatgcggcttcatat-ttttgttttca |
27509991 |
T |
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| Q |
206 |
aagcattatagagttggttctattctgagttgagaaatgtactctttt |
253 |
Q |
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| T |
27509990 |
aagcattatagag-tggttctattctgagttgagaaatgtactctttt |
27509944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 27271209 - 27271457
Alignment:
| Q |
6 |
aggagcagagatcaaattaggtgtcacaggagcagctaagaat--------agggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaa |
97 |
Q |
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| T |
27271209 |
aggagcaaatatcaaattaggtgtcacgggagcagctaacaatggggacatagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaa |
27271308 |
T |
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| Q |
98 |
tgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctagaagaattagtaatattaattatgccgcttcatattttt |
197 |
Q |
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| T |
27271309 |
tgcctccatcagcaagcactggaggaaatggtccatcttatcaatttaagcactatttctggaagaattagtaatattaatcatgtcgctttata-tttt |
27271407 |
T |
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| Q |
198 |
tgttttcaaagcattatagagttggttctattctgagttgagaaatgtactct |
250 |
Q |
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| T |
27271408 |
tgttttcaaagcattagag---tggttctattctgagttgagaaatgtactct |
27271457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 39210744 - 39210992
Alignment:
| Q |
6 |
aggagcagagatcaaattaggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctcca |
105 |
Q |
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| T |
39210744 |
aggagcaaagatcaaattaggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctcca |
39210843 |
T |
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| Q |
106 |
tctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctagaagaattagtaa---tattaattatgccgcttcatattttttgttt |
202 |
Q |
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| T |
39210844 |
tctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattagtaatagtattaattatgccacttcata-tttttgttt |
39210942 |
T |
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| Q |
203 |
tcaaagcattatagagttggttctattctgagttgagaaatgtactctttt |
253 |
Q |
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| T |
39210943 |
tcaaagcattatagag-tggttctattctgagttgagaaatgtactctttt |
39210992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 29707587 - 29707399
Alignment:
| Q |
58 |
tatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaagcagtatttct |
157 |
Q |
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| T |
29707587 |
tatcattgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaatttaagtagtatttct |
29707488 |
T |
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| Q |
158 |
agaagaattagtaatattaattatgccgcttcatattttttgttttcaaagcattatagagttggttctattctgagttgagaaatgtactct |
250 |
Q |
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| T |
29707487 |
tgaagaattagtaatattaatcatgtcgctttata-tttttgttttcaaagcattagag---tggttctattctgagttgagaaatgtactct |
29707399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 31949733 - 31949887
Alignment:
| Q |
14 |
agatcaaattaggtgtcacaggagcagctaagaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaag |
113 |
Q |
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| T |
31949733 |
agatcaaacttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctatagg |
31949832 |
T |
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| Q |
114 |
cattggagaaaatggtccatcttatcaatttaagcagtatttctagaagaattag |
168 |
Q |
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| T |
31949833 |
cattggtgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
31949887 |
T |
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