View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20884_low_4 (Length: 611)
Name: NF20884_low_4
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Complemental strand, 30316003 - 30315421
Alignment:
| Q |
18 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaa-ggtggaactctagttatagttacaagctaatgccgttttattcattgctcact |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| | ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
30316003 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcact |
30315904 |
T |
|
| Q |
117 |
atgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcga |
208 |
Q |
| |
|
||||||||||| | |||| ||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30315903 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcga |
30315804 |
T |
|
| Q |
209 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315803 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30315704 |
T |
|
| Q |
309 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaattaagtagaaccaaatattttaaataatgttaacatgtcattn |
408 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315703 |
ctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaattaagtagaaccaaatattttaaataatgttaacatgtcatta |
30315604 |
T |
|
| Q |
409 |
nnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggtagaaaactgttgtaattaggccatacagaaggaaagagactgagtgaga |
508 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30315603 |
aaaataaaaaataactaatataggctacattcaatttaatttaattttggtagaaaactattgtaattaggccatacagaaggaaagagaccgagtgaga |
30315504 |
T |
|
| Q |
509 |
atatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatctgaagaagc |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
30315503 |
atatagtatataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatccgaggaagc |
30315421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 30292494 - 30292147
Alignment:
| Q |
9 |
agcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292494 |
agcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtaggaaagtggaactctagttatagttacaagctaatgccgttttattcat |
30292395 |
T |
|
| Q |
109 |
tgctcactatgagctatagcttcttagagcgaacaagcataataagcattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcga |
208 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292394 |
tgctcactatgagct---------tagagcatacaagcataataagcattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcga |
30292304 |
T |
|
| Q |
209 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292303 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatg |
30292204 |
T |
|
| Q |
309 |
ctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30292203 |
ctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaa |
30292147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 30305136 - 30304781
Alignment:
| Q |
18 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcacta |
117 |
Q |
| |
|
|||||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
30305136 |
gaggtggctcaaaacttattcttgattcagttattcatagtagaaaggtggaactctagttatagttacaagataatgccgttttattcatcgctcatta |
30305037 |
T |
|
| Q |
118 |
tgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgac |
209 |
Q |
| |
|
| |||||||||| | || | | || |||||||| |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30305036 |
ttagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgac |
30304937 |
T |
|
| Q |
210 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30304936 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgc |
30304837 |
T |
|
| Q |
310 |
tagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30304836 |
tagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaa |
30304781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 30287471 - 30287113
Alignment:
| Q |
9 |
agcagagaggaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcat |
108 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
30287471 |
agcagagaggaggaggcacaaaacttattcttgattaatttattcatagtagaaaggaggaactctagtta------caagataatgccgttttattctt |
30287378 |
T |
|
| Q |
109 |
tgctcactatgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctct |
200 |
Q |
| |
|
| |||| |||||||||||| | |||| ||| ||| |||||| | |||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
30287377 |
ttctcattatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctct |
30287278 |
T |
|
| Q |
201 |
ggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287277 |
ggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatcc |
30287178 |
T |
|
| Q |
301 |
agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
365 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
30287177 |
agggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaa |
30287113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 30300338 - 30299989
Alignment:
| Q |
18 |
gaggtggcacaaaacttgttcttgattaatttattcatagtagaaaggtggaactctagttatagttacaagctaatgccgttttattcattgctcacta |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || |||| || ||||||||||||| ||||||||| |
|
|
| T |
30300338 |
gaggtggcacaaaacttattcttgattaatttattcatggtggaaaggtggaactctagata------caagatattgccgttttattctctgctcacta |
30300245 |
T |
|
| Q |
118 |
tgagctatagcttcttagagcgaacaagcataataag--------cattaaaaagttcccgaaattgaagaaataggctccctttttctctggcttcgac |
209 |
Q |
| |
|
|||||||| || |||| ||| |||||||||||| |||||||| |||| |||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
30300244 |
tgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgac |
30300145 |
T |
|
| Q |
210 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300144 |
cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgc |
30300045 |
T |
|
| Q |
310 |
tagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa |
365 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30300044 |
tacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaa |
30299989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 361 - 597
Target Start/End: Complemental strand, 30287064 - 30286834
Alignment:
| Q |
361 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
460 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30287064 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30286965 |
T |
|
| Q |
461 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
560 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30286964 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagttcctttgattgttctccgcattgatac |
30286871 |
T |
|
| Q |
561 |
caaatccaagcaaagagagatctgaagaagcagttac |
597 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30286870 |
caaatccaagcaaagagagatccgaagaagcagttac |
30286834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 361 - 591
Target Start/End: Complemental strand, 30292098 - 30291874
Alignment:
| Q |
361 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
460 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30292098 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30291999 |
T |
|
| Q |
461 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
560 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30291998 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30291905 |
T |
|
| Q |
561 |
caaatccaagcaaagagagatctgaagaagc |
591 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |
|
|
| T |
30291904 |
caaatccaagcaaagagagatccgacgaagc |
30291874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 361 - 591
Target Start/End: Complemental strand, 30304732 - 30304508
Alignment:
| Q |
361 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattnnnnnnnnnnnntaactaatataggctacattcaattcaatttaattttggta |
460 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
30304732 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaatttaatttaattttggta |
30304633 |
T |
|
| Q |
461 |
gaaaactgttgtaattaggccatacagaaggaaagagactgagtgagaatatagtatataccagcaaggaagttcctctgattgttctcagcattgatac |
560 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
30304632 |
ggaaactattgtaattaggccatacagaa----agagactgagtgagaatacagtata--ccagcaaggaagctcctctggttgttctcagcattgatac |
30304539 |
T |
|
| Q |
561 |
caaatccaagcaaagagagatctgaagaagc |
591 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |
|
|
| T |
30304538 |
caaatccaagcaaagagagatccgacgaagc |
30304508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 519 - 591
Target Start/End: Complemental strand, 30299370 - 30299298
Alignment:
| Q |
519 |
taccagcaaggaagttcctctgattgttctcagcattgataccaaatccaagcaaagagagatctgaagaagc |
591 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
30299370 |
tacctgcaaggaagttcctctcgttgttctcagcattgataccaaatccaagcaaagagagatccgaggaagc |
30299298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 221 - 362
Target Start/End: Complemental strand, 46810582 - 46810441
Alignment:
| Q |
221 |
tccctttgttgaggctgagcatttgcaaagtaagattctctttgattctttagtagactctcaacatcttgagctgatccagggaatgctagctctttca |
320 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||| || ||||| |||| ||| |||||||||||||| | |||||| | |
|
|
| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
46810483 |
T |
|
| Q |
321 |
ctggtctctgaatttggcttatcacattgtcttcctcacctt |
362 |
Q |
| |
|
|||| || | ||||| |||||||||||||| |||||||||| |
|
|
| T |
46810482 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
46810441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 46810333 - 46810280
Alignment:
| Q |
517 |
tataccagcaaggaagttcctctgattgttctcagcattgataccaaatccaag |
570 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46810333 |
tatacctgcaagaaagtttctctgattgttctcagcattgataccaaagccaag |
46810280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University