View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_44 (Length: 239)
Name: NF20884_low_44
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_44 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 45361766 - 45361545
Alignment:
| Q |
18 |
caattagcattggttacatcatattgagaagttgagttcattcacaacatttttactagtttgacaaccnnnnnnnagggaaaccgtataaatcttgttg |
117 |
Q |
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| T |
45361766 |
caattagcattggttacatcatattgagaagttgagttcattcacaacatttttactagtttgacaacctttttttagggaaaccgtataaatcttgttg |
45361667 |
T |
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| Q |
118 |
ttagttctctaaagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttat |
217 |
Q |
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| T |
45361666 |
ttagttctctaaagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttat |
45361567 |
T |
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| Q |
218 |
ataattagtaattgtaggaaat |
239 |
Q |
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| T |
45361566 |
ataattagtaattgtaggaaat |
45361545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 8590813 - 8590694
Alignment:
| Q |
99 |
aaccgtataaatcttgttgttagttctctaaagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttt |
198 |
Q |
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|||| ||||||| |||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||| || ||||||||||| |||||||||| | |
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| T |
8590813 |
aaccttataaatgttgttgttagctctccaaagaatatcatgattttgattcgtagtttttgtaagtatttgcttaggtaggatatacgatttttattct |
8590714 |
T |
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| Q |
199 |
tcattgaactaaattttata |
218 |
Q |
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| T |
8590713 |
tcattaaactaaattttata |
8590694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 39212498 - 39212605
Alignment:
| Q |
122 |
ttctctaaagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataa |
221 |
Q |
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| T |
39212498 |
ttctccaaagaatatcatgattttgattggtagtttttgtaagtgtttgttttgccggtatataagacttttattcttcatttaactaaattttatataa |
39212597 |
T |
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| Q |
222 |
ttagtaat |
229 |
Q |
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| T |
39212598 |
tcagtaat |
39212605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 39212411 - 39212468
Alignment:
| Q |
18 |
caattagcattggttacatcatattgagaagttgagttcattcacaacatttttacta |
75 |
Q |
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| T |
39212411 |
caattatcatcggttacatcatttagagaagttgagttcattcacaatatctttacta |
39212468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 6864108 - 6864230
Alignment:
| Q |
112 |
ttgttgttagttctctaaagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaa |
211 |
Q |
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| T |
6864108 |
ttgttgttagttctccaaaaaatatcatgattttgattggtagtttttgtaagtatttgccttggcaacatataagatttttattcttcacttaactaaa |
6864207 |
T |
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| Q |
212 |
ttttatataattagtaattgtag |
234 |
Q |
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| T |
6864208 |
ttttatataattggtaactgtag |
6864230 |
T |
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