View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_50 (Length: 219)
Name: NF20884_low_50
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 56025670 - 56025856
Alignment:
| Q |
19 |
tcaaccatgtttaaacaaatccacatcagcacattgattattgnnnnnnnnnnaaaagcacattaattgttgttaaaagcaaataatggannnnnnnn-g |
117 |
Q |
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| T |
56025670 |
tcaaccacgtttaaacaaatccacatcagcacattgattttttttttttttaaggaagcacattgattgttgttaaaagcaaataatggatttttttttg |
56025769 |
T |
|
| Q |
118 |
gtacataatggattttaattaagcaataatcacgagttcgtgaatgcgtgaaaataaaataaatgaccgaattctgcctaatctgtg |
204 |
Q |
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| T |
56025770 |
gtacataatggattttaattaagcaataatcacgagttcgtgaatgcataaaaataaaataaatgaccgagttctgcctaatctgtg |
56025856 |
T |
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