View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_52 (Length: 217)
Name: NF20884_low_52
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 6713665 - 6713877
Alignment:
| Q |
1 |
acaaaaccacccagacacatgtctatgnnnnnnngagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaa |
100 |
Q |
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| T |
6713665 |
acaaaaccacccagacacatgtgtatgtttttttgagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaa |
6713764 |
T |
|
| Q |
101 |
tgtcaaaaggaaaagcaaaaacgatgcaactaaaatcaagaaccatgagattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6713765 |
tgtcaaaaggaaaagcaaaaacgatgcaactaaaatcaagaaccat--gattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacata |
6713862 |
T |
|
| Q |
201 |
ggggcacaatcaaca |
215 |
Q |
| |
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||||||||||||||| |
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| T |
6713863 |
ggggcacaatcaaca |
6713877 |
T |
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