View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20884_low_54 (Length: 214)

Name: NF20884_low_54
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20884_low_54
NF20884_low_54
[»] chr7 (15 HSPs)
chr7 (105-198)||(42418189-42418282)
chr7 (140-198)||(42417423-42417481)
chr7 (106-192)||(31077728-31077806)
chr7 (139-198)||(41406985-41407044)
chr7 (140-198)||(31076899-31076957)
chr7 (15-81)||(42418116-42418179)
chr7 (108-161)||(9146087-9146140)
chr7 (134-198)||(13782139-13782202)
chr7 (166-198)||(13783081-13783113)
chr7 (150-198)||(43103818-43103866)
chr7 (151-198)||(43104708-43104755)
chr7 (140-198)||(14255616-14255673)
chr7 (138-198)||(32949844-32949901)
chr7 (108-161)||(42745657-42745710)
chr7 (15-81)||(31077654-31077717)
[»] chr4 (13 HSPs)
chr4 (105-198)||(50185265-50185358)
chr4 (138-198)||(26341376-26341436)
chr4 (140-198)||(50186066-50186124)
chr4 (140-198)||(43460582-43460640)
chr4 (108-176)||(5941354-5941421)
chr4 (142-198)||(12920332-12920388)
chr4 (138-198)||(43461428-43461488)
chr4 (15-81)||(50185368-50185431)
chr4 (150-198)||(7138939-7138987)
chr4 (166-198)||(50303396-50303428)
chr4 (145-198)||(12921062-12921115)
chr4 (132-161)||(49648231-49648260)
chr4 (140-180)||(26335998-26336038)
[»] chr5 (20 HSPs)
chr5 (105-198)||(33573240-33573333)
chr5 (105-198)||(10951270-10951363)
chr5 (105-198)||(4084738-4084829)
chr5 (140-198)||(33574115-33574173)
chr5 (140-198)||(6051755-6051813)
chr5 (138-198)||(6052603-6052663)
chr5 (138-198)||(38486960-38487020)
chr5 (138-198)||(12698145-12698205)
chr5 (15-81)||(33573343-33573406)
chr5 (140-198)||(11448584-11448641)
chr5 (150-198)||(209518-209566)
chr5 (150-198)||(27365647-27365695)
chr5 (149-198)||(24872623-24872671)
chr5 (142-198)||(4909021-4909077)
chr5 (150-198)||(27364580-27364628)
chr5 (159-198)||(22798481-22798520)
chr5 (166-197)||(25746807-25746838)
chr5 (108-198)||(41609495-41609583)
chr5 (134-198)||(24180753-24180814)
chr5 (166-198)||(24871646-24871678)
[»] chr3 (14 HSPs)
chr3 (105-180)||(46889330-46889405)
chr3 (140-198)||(33565345-33565403)
chr3 (139-198)||(33336219-33336278)
chr3 (15-81)||(46889415-46889478)
chr3 (140-198)||(24515929-24515986)
chr3 (140-198)||(36243408-36243466)
chr3 (108-161)||(37915431-37915484)
chr3 (142-198)||(29430620-29430676)
chr3 (134-198)||(41486362-41486425)
chr3 (149-192)||(20519015-20519058)
chr3 (108-198)||(49308116-49308206)
chr3 (150-198)||(8652021-8652069)
chr3 (166-198)||(41487319-41487351)
chr3 (150-198)||(42878396-42878444)
[»] chr6 (4 HSPs)
chr6 (138-198)||(24063852-24063912)
chr6 (138-198)||(34999266-34999325)
chr6 (134-198)||(18242660-18242721)
chr6 (134-198)||(32645833-32645896)
[»] chr8 (5 HSPs)
chr8 (140-198)||(5780708-5780766)
chr8 (108-177)||(44495099-44495167)
chr8 (138-198)||(31286237-31286297)
chr8 (138-197)||(45107988-45108047)
chr8 (134-198)||(20105071-20105135)
[»] chr1 (9 HSPs)
chr1 (124-182)||(28764392-28764450)
chr1 (110-157)||(23732913-23732960)
chr1 (140-198)||(44770385-44770442)
chr1 (150-198)||(10920147-10920195)
chr1 (145-198)||(1469606-1469658)
chr1 (140-197)||(19534055-19534112)
chr1 (150-198)||(23818283-23818331)
chr1 (140-198)||(44769640-44769697)
chr1 (166-198)||(36390437-36390469)
[»] chr2 (7 HSPs)
chr2 (110-198)||(30266311-30266396)
chr2 (142-198)||(33739413-33739469)
chr2 (142-183)||(33739349-33739390)
chr2 (111-178)||(25616858-25616924)
chr2 (168-198)||(29647455-29647485)
chr2 (168-197)||(25617829-25617858)
chr2 (108-161)||(42847955-42848008)
[»] scaffold0136 (1 HSPs)
scaffold0136 (108-161)||(23702-23755)
[»] scaffold0126 (1 HSPs)
scaffold0126 (114-198)||(34491-34575)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 42418189 - 42418282
Alignment:
Q  105 gaggcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42418189 gaggcgttgattttgatctaacggtctaaattaattcctctcaccctctcattttaaaatgtcctctcatttgatacatcccctatatatatat 42418282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 42417481 - 42417423
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  42417481 tcctctcaccctctcattctaaaatgtcctctcacttgatacatcccctatatatatat 42417423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 31077728 - 31077806
Alignment:
Q  106 aggcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatat 192  Q
    ||||||||||||||||||||| |||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||    
T  31077728 aggcgttgattttgatctaacggtctaaattaattcctc--------tcattataaaatgtcctctcatttgatacatcccatatat 31077806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 41406985 - 41407044
Alignment:
Q  139 ttcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||    
T  41406985 ttcctctcaccctctcattataaaatgtcatctcatttgatacatcccttttatatatat 41407044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 31076957 - 31076899
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  31076957 tcctctcaccctctcattataaaatgtcatctcacttgatacaacccctatatatatat 31076899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 42418116 - 42418179
Alignment:
Q  15 agagagaagacgaagtggagaagaggagggaagataagttacaatatgtgacccttttgaaagaaca 81  Q
    |||||||||||||||||||||||||||   |||||| |||||| ||| |||||||||||||||||||    
T  42418116 agagagaagacgaagtggagaagagga---aagataggttacagtatttgacccttttgaaagaaca 42418179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 9146140 - 9146087
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataa 161  Q
    ||||||||||||||| ||  ||| |||||||||||||||| |||||||||||||    
T  9146140 gcgttgattttgatccaaatgtccaaattaattcctctcatcctctcattataa 9146087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 13782202 - 13782139
Alignment:
Q  134 attaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||| |||||||||| ||||||||||| |   |||||||||||| |||||||||||||||||||    
T  13782202 attaaatcctctcacc-tctcattataagaatccctctcatttgaaacatcccctatatatatat 13782139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 13783081 - 13783113
Alignment:
Q  166 tcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||||||||||||    
T  13783081 tcctctcatttgatacatcccctatatatatat 13783113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 43103866 - 43103818
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||| |||||||| |  ||||||||||||    
T  43103866 ctctcattataaaatgtcctctcacttgatacaccttctatatatatat 43103818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 43104708 - 43104755
Alignment:
Q  151 tctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  43104708 tctcattataaaatgtcatctcacttgatacaccctctatatatatat 43104755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 14255616 - 14255673
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||||| ||| |||||||||| ||||||  |||||||||||    
T  14255616 tcctctcaccctctcatt-taaaaagtcatctcatttgaaacatcctatatatatatat 14255673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 32949844 - 32949901
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||| ||||||||||||| |  |||||||||||||||||  ||||||||||||||    
T  32949844 attcctctcatcctctcattataacac-tcctctcatttgataca--ccctatatatatat 32949901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 42745710 - 42745657
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataa 161  Q
    |||||||||| |||| ||| ||| |||||||||||||||| ||||| |||||||    
T  42745710 gcgttgatttagatccaacggtccaaattaattcctctcatcctcttattataa 42745657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 31077654 - 31077717
Alignment:
Q  15 agagagaagacgaagtggagaagaggagggaagataagttacaatatgtgacccttttgaaagaaca 81  Q
    |||||||||||||||||||||| ||||   |||||| |||||  ||||||||||| ||| |||||||    
T  31077654 agagagaagacgaagtggagaacagga---aagataggttacggtatgtgaccctcttggaagaaca 31077717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 50185358 - 50185265
Alignment:
Q  105 gaggcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50185358 gaggcgttgattttgatctaacggtctaaattaattcctctcaccctctcattttaaaatgtcctctcatttgatacatcccctatatatatat 50185265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 26341376 - 26341436
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  26341376 attcctctcaccctctcattataacacttcctctcatttgatacatcccctatatatatat 26341436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 50186066 - 50186124
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  50186066 tcctctcaccctctcattctaaaatgtcctctcacttgatacatcacctatatatatat 50186124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 43460640 - 43460582
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||    
T  43460640 tcctctcaccctctcattataacacttcctctcatttgatacatcccatatatatatat 43460582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 5941354 - 5941421
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcattt 176  Q
    |||||||||| |||||||| ||||| ||||||||||||||||||||| || ||||| ||||||||||||    
T  5941354 gcgttgatttagatctaactgtctatattaattcctctcaccctctcgtt-taaaaagtcctctcattt 5941421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 12920388 - 12920332
Alignment:
Q  142 ctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||| | || ||||||||||||||||||| |||||||||||    
T  12920388 ctctcaccctctcattataagaagttctctcatttgatacatcccatatatatatat 12920332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 43461428 - 43461488
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||| |||| ||||||||||| |  |||||||||||||||||||||||||||||||||    
T  43461428 attcctcccaccttctcattataacacttcctctcatttgatacatcccctatatatatat 43461488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 50185431 - 50185368
Alignment:
Q  15 agagagaagacgaagtggagaagaggagggaagataagttacaatatgtgacccttttgaaagaaca 81  Q
    |||||||||||||||||||||||||||   |||||| |||||| ||| |||||||||||||||||||    
T  50185431 agagagaagacgaagtggagaagagga---aagataggttacagtatttgacccttttgaaagaaca 50185368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 7138987 - 7138939
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||| | |||||||||||||||||||  |||||||||||||    
T  7138987 ctctcattataagaagtcctctcatttgatacatttcctatatatatat 7138939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 50303396 - 50303428
Alignment:
Q  166 tcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||||||||||||    
T  50303396 tcctctcatttgatacatcccctatatatatat 50303428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 12921062 - 12921115
Alignment:
Q  145 tcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||||| | ||| | |||||||||||||||  |||||||||||    
T  12921062 tcaccctctcattataagaagtcatatcatttgatacatcctatatatatatat 12921115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 49648231 - 49648260
Alignment:
Q  132 aaattaattcctctcaccctctcattataa 161  Q
    ||||||||||||||||||||||||||||||    
T  49648231 aaattaattcctctcaccctctcattataa 49648260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 26336038 - 26335998
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgata 180  Q
    |||||||||||||||||||||| |  |||||||||||||||    
T  26336038 tcctctcaccctctcattataacacttcctctcatttgata 26335998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 33573333 - 33573240
Alignment:
Q  105 gaggcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33573333 gaggcgttgattttgatctaacggtctaaattaattcctctcagcctctcattttaaaatgtcctctcatttgatacatcccctatatatatat 33573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 10951363 - 10951270
Alignment:
Q  105 gaggcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||||||  |||||| | |||| ||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||||    
T  10951363 gaggcgttgattttgatccgacagtccacattatttcctctcaccctctcattataaaatgccctctcacttgatacaccctctatatatatat 10951270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 4084738 - 4084829
Alignment:
Q  105 gaggcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||| |||||||||  || ||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  4084738 gaggcgtttattttgatccgacggtccacattatttcctctcaccctctcattataaaatgtcctctcacttgataca--ccctatatatatat 4084829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 33574173 - 33574115
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  33574173 tcctctcaccctctcattctaaaatgtcctctcacttgatacatcccctatatatatat 33574115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 6051813 - 6051755
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  6051813 tcctctcaccctctcattataacacttcctctcatttgatacatcccctatatatatat 6051755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 6052603 - 6052663
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||| |||||||||||| |  |||||||||||||||||||||||||||||||||    
T  6052603 attcctctcactctctcattataacacttcctctcatttgatacatcccctatatatatat 6052663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 38487020 - 38486960
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  38487020 attcctctcaccctctcattataaatagtgctctcacttgatacatcccctatatatatat 38486960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 12698145 - 12698205
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||| ||||||||||||| |  |||||||||||||||||||||| ||||||||||    
T  12698145 attcctctcagcctctcattataacacttcctctcatttgatacatcccccatatatatat 12698205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 33573406 - 33573343
Alignment:
Q  15 agagagaagacgaagtggagaagaggagggaagataagttacaatatgtgacccttttgaaagaaca 81  Q
    |||||||||||||||||||||||||||   |||||| |||||| ||| |||||||||||||||||||    
T  33573406 agagagaagacgaagtggagaagagga---aagataggttacagtatttgacccttttgaaagaaca 33573343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 11448584 - 11448641
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||| | |||||||||||||||||| |||||||||||||||    
T  11448584 tcctctcaccctctcatt-taagaagtcctctcatttgatacaccccctatatatatat 11448641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 209566 - 209518
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||| |  |||||||||||||||||||||||||||||||||    
T  209566 ctctcattataacacttcctctcatttgatacatcccctatatatatat 209518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 27365647 - 27365695
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||    
T  27365647 ctctcattataaaatgtcctctcacttgatacaccctctatatatatat 27365695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 24872623 - 24872671
Alignment:
Q  149 cctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  24872623 cctctcattataaa-tgtcctctcatttgatacaccctctatatatatat 24872671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 4909021 - 4909077
Alignment:
Q  142 ctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||| |||| || | ||||||||||||||| ||||| |||||||||    
T  4909021 ctctcaccctctcataataagatatgctctcatttgatacaccccctctatatatat 4909077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 27364628 - 27364580
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||||| |||||| |||||||| || ||||||||||||    
T  27364628 ctctcattataaaatgtactctcacttgatacaccctctatatatatat 27364580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 22798520 - 22798481
Alignment:
Q  159 taaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  22798520 taaaatgtcctctcatttgatacatcctatatatatatat 22798481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 25746807 - 25746838
Alignment:
Q  166 tcctctcatttgatacatcccctatatatata 197  Q
    ||||||||||||||||||||||||||||||||    
T  25746807 tcctctcatttgatacatcccctatatatata 25746838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 41609583 - 41609495
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||| ||  ||  |||||||||||||||| |||||||||||||    |||||||| |||||  || ||||||||||||||    
T  41609583 gcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgat--atgccctatatatatat 41609495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 24180753 - 24180814
Alignment:
Q  134 attaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||| ||||||||||||| | || ||||||||||| |||  ||||||||||||||    
T  24180753 attaattcctctcatcctctcattataaga-gtgctctcatttgaaaca--ccctatatatatat 24180814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 24871678 - 24871646
Alignment:
Q  166 tcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||| |||||||||||||||||||    
T  24871678 tcctctcatttgaaacatcccctatatatatat 24871646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 46889405 - 46889330
Alignment:
Q  105 gaggcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgata 180  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46889405 gaggtgttgattttgatctaacggtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgata 46889330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 33565403 - 33565345
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  33565403 tcctctcaccctctcattctaaaatgtcctctcacttgatacatcccctatatatatat 33565345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 33336278 - 33336219
Alignment:
Q  139 ttcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  33336278 ttccactcaccctcttattataaaatgtcctctcatttgaaacatcccctatatatatat 33336219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 46889478 - 46889415
Alignment:
Q  15 agagagaagacgaagtggagaagaggagggaagataagttacaatatgtgacccttttgaaagaaca 81  Q
    |||||||||||||||||||||||||||   |||||| |||||| ||| |||||||||||||||||||    
T  46889478 agagagaagacgaagtggagaagagga---aagataggttacagtatatgacccttttgaaagaaca 46889415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 24515929 - 24515986
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||| | |||||||||||||||||| |||||||||||||||    
T  24515929 tcctctcaccctctcatt-taagaagtcctctcatttgatacaccccctatatatatat 24515986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 36243466 - 36243408
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||| |  |||| |  |||||||||||||||||||||||||||||||||    
T  36243466 tcctctcaccctcttacaataacagctcctctcatttgatacatcccctatatatatat 36243408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 37915484 - 37915431
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataa 161  Q
    ||||||||||||||| ||  ||||| |||||||||||||| |||||||||||||    
T  37915484 gcgttgattttgatccaatggtctagattaattcctctcatcctctcattataa 37915431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 29430620 - 29430676
Alignment:
Q  142 ctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||| |||||||| |||| |  ||||||||||||| |||||||||||||||||||    
T  29430620 ctctcatcctctcatcataagacatcctctcatttgaaacatcccctatatatatat 29430676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 41486425 - 41486362
Alignment:
Q  134 attaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||| |||||||||| ||||||||||| |   |||||||||||| |||||||||||||||||||    
T  41486425 attaaatcctctcacc-tctcattataagaatccctctcatttgaaacatcccctatatatatat 41486362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 20519015 - 20519058
Alignment:
Q  149 cctctcattataaaatgtcctctcatttgatacatcccctatat 192  Q
    |||||||||||||||| |||||| |||| |||||||||||||||    
T  20519015 cctctcattataaaatctcctcttatttaatacatcccctatat 20519058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 49308206 - 49308116
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||| ||   || |||||||||||||||| |||||||||||||    |||||||| ||||||   || ||||||||||||    
T  49308206 gcgttgattttgatccaatgatccaaattaattcctctcatcctctcattataactactcctctcacttgatatgccctctatatatatat 49308116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 8652021 - 8652069
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||| |||||  ||||||||||||||||||||  |||||||||||    
T  8652021 ctctcattttaaaaactcctctcatttgatacatcctatatatatatat 8652069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 41487319 - 41487351
Alignment:
Q  166 tcctctcatttgatacatcccctatatatatat 198  Q
    |||||| ||||||||||||||||||||||||||    
T  41487319 tcctctaatttgatacatcccctatatatatat 41487351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 42878396 - 42878444
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||| ||||||||||| ||||||  ||| ||||||||||||    
T  42878396 ctctcattataagatgtcctctcacttgatatgtcctctatatatatat 42878444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 24063912 - 24063852
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  24063912 attcctctcaccctctcattataacacttcctctcatttgatacatcccctatatatatat 24063852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 34999266 - 34999325
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||| |||||||||| |||| | ||||||||||||||||||| || |||||||||||    
T  34999266 attcctcttaccctctcataataaga-gtcctctcatttgatacattccatatatatatat 34999325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 18242721 - 18242660
Alignment:
Q  134 attaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||| ||||||||||||| | || ||||||||||| |||  ||||||||||||||    
T  18242721 attaattcctctcatcctctcattataaga-gtgctctcatttgaaaca--ccctatatatatat 18242660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 32645896 - 32645833
Alignment:
Q  134 attaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||| |||||||||| |||||||||||     |||||||||||| |||||||||||||||||||    
T  32645896 attaaatcctctcacc-tctcattataagcatccctctcatttgaaacatcccctatatatatat 32645833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 5780708 - 5780766
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||| |||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  5780708 tcctctcatcctctcacaataacatgtcctctcatttgatacatcccctatatatatat 5780766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 44495099 - 44495167
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttg 177  Q
    |||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  44495099 gcgttgatttagatccaacggtctaaattaattcctctcaccctctcatt-taaaaactcctctcatttg 44495167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 31286297 - 31286237
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||| |  | |||||||||||||||| ||||||||||||||    
T  31286297 attcctctcaccctctcattataacactttctctcatttgatacattccctatatatatat 31286237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 45107988 - 45108047
Alignment:
Q  138 attcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatata 197  Q
    |||||||||||||||||||||||||  || |||||| |||||||||||| ||||||||||    
T  45107988 attcctctcaccctctcattataaatagtactctcacttgatacatcccatatatatata 45108047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 20105071 - 20105135
Alignment:
Q  134 attaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||| |||||||||||||   ||||||||| ||||||   || ||||||||||||    
T  20105071 attaattcctctcatcctctcattataactagtcctctcacttgatatgccctctatatatatat 20105135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 28764392 - 28764450
Alignment:
Q  124 aacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgataca 182  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28764392 aacagtccagattatttcctctcaccctctcattataaaatgtcctctcacttgataca 28764450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 23732913 - 23732960
Alignment:
Q  110 gttgattttgatctaacagtctaaattaattcctctcaccctctcatt 157  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  23732913 gttgatttagatctaacggtctaaattaattcctctcaccctctcatt 23732960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 44770385 - 44770442
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| || || |||||||||||||||||| |||||||||||||||    
T  44770385 tcctctcaccctctcatt-tagaaagtcctctcatttgatacaccccctatatatatat 44770442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 10920147 - 10920195
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||    
T  10920147 ctctcattataaaatgtcctctcacttgatacaccctctatatatatat 10920195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 1469606 - 1469658
Alignment:
Q  145 tcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| ||||||| ||||||||||||||  |||||||||||    
T  1469606 tcaccctctcattataaa-tgtcctcacatttgatacatccaatatatatatat 1469658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 19534112 - 19534055
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatata 197  Q
    ||||||||||||||||| ||||    ||||||||||||| ||||||||||||||||||    
T  19534112 tcctctcaccctctcataataatcactcctctcatttgaaacatcccctatatatata 19534055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 23818283 - 23818331
Alignment:
Q  150 ctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    ||||||||||||||| |||||||| |||||||| || ||||||||||||    
T  23818283 ctctcattataaaatatcctctcacttgatacaccctctatatatatat 23818331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 44769697 - 44769640
Alignment:
Q  140 tcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||| || || || ||||||||||||||| || ||||||||||||    
T  44769697 tcctctcaccctctcatt-tagaaagttctctcatttgatacaccctctatatatatat 44769640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 36390469 - 36390437
Alignment:
Q  166 tcctctcatttgatacatcccctatatatatat 198  Q
    |||||||| ||||||||||||||||||||||||    
T  36390469 tcctctcacttgatacatcccctatatatatat 36390437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 30266396 - 30266311
Alignment:
Q  110 gttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||| ||||| || ||||||||||  | || ||||||||||||||    
T  30266396 gttgatttagatccaacggtctaaattaattcctctcaccctctcatt-taaaaagtgctctcatttg--aaatgccctatatatatat 30266311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 33739413 - 33739469
Alignment:
Q  142 ctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||| | |||||||||||||||||||  |||||||||||||    
T  33739413 ctctcaccctctcattataagaagtcctctcatttgatacatttcctatatatatat 33739469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 33739349 - 33739390
Alignment:
Q  142 ctctcaccctctcattataaaatgtcctctcatttgatacat 183  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  33739349 ctctcaccctctcattataagaagtcctctcatttgatacat 33739390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 25616924 - 25616858
Alignment:
Q  111 ttgattttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttga 178  Q
    |||||||  ||| ||| |||||| |||||| |||||||||||||||| ||||| ||||||||||||||    
T  25616924 ttgatttaaatccaacggtctaagttaatttctctcaccctctcatt-taaaaagtcctctcatttga 25616858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 29647455 - 29647485
Alignment:
Q  168 ctctcatttgatacatcccctatatatatat 198  Q
    |||||||||||||||||||||||||||||||    
T  29647455 ctctcatttgatacatcccctatatatatat 29647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 25617829 - 25617858
Alignment:
Q  168 ctctcatttgatacatcccctatatatata 197  Q
    ||||||||||||||||||||||||||||||    
T  25617829 ctctcatttgatacatcccctatatatata 25617858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 42848008 - 42847955
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataa 161  Q
    |||||||||| |||| ||  ||| ||| ||||||||||||||||||||||||||    
T  42848008 gcgttgatttagatccaatggtccaaactaattcctctcaccctctcattataa 42847955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 23702 - 23755
Alignment:
Q  108 gcgttgattttgatctaacagtctaaattaattcctctcaccctctcattataa 161  Q
    ||||||||||||||| ||   |||| |||||||||||||| |||||||||||||    
T  23702 gcgttgattttgatccaatgatctatattaattcctctcatcctctcattataa 23755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 34491 - 34575
Alignment:
Q  114 attttgatctaacagtctaaattaattcctctcaccctctcattataaaatgtcctctcatttgatacatcccctatatatatat 198  Q
    |||| |||||||  ||||| ||| | ||||||||||||||||  ||||    ||||||||||| ||||||||| |||||||||||    
T  34491 atttagatctaatggtctatatttactcctctcaccctctcacaataaccactcctctcatttaatacatcccatatatatatat 34575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University