View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_7 (Length: 444)
Name: NF20884_low_7
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 37179838 - 37180278
Alignment:
| Q |
7 |
attacgtacacatctattaataaatttgttagnnnnnnn-tatttatatctaatagaagaggacatgcaagttcaacaacaaagaattttgaggtcaata |
105 |
Q |
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| T |
37179838 |
attacgtacacatctattaataaatttgttagaaaaaaaatatttatctctaatagaagaggacatgcaagctcaacaacaaagaattttgaggtcaata |
37179937 |
T |
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| Q |
106 |
gagacacttttgtagcttgtatggcaaggctataactttctaatccaacaaaataagaaattatgaatgttgttgacactgaaattccatggtacgccaa |
205 |
Q |
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| T |
37179938 |
gagacacttttgtagcttgtacggcaaggctataactttctaatccaacaaaataagaaattatgaatgttgttgacactgaaattccatggtacgccaa |
37180037 |
T |
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| Q |
206 |
caaaatgcatattaactttcaaacatgtcttcatgtaagcatttgtaaccgactttatggtatttata----tcnnnnnnnnnnagggaggtatttatat |
301 |
Q |
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| T |
37180038 |
caaaatgcatattaactttcaaacatgtcttcatgtaagcatttgtaaccgactttatggtatttatatctctctttttttctgagggaggtatttatat |
37180137 |
T |
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| Q |
302 |
ctctttcactttaccattctatagagtatatagtaatgtatactttattnnnnnnnnnnntcaaaattaactattaattatagatattttaaagtaacta |
401 |
Q |
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| T |
37180138 |
ctctttcactttaccattctatagagtatataataatgtatactttatt--aaaaaaaaatcaaaattaactattaattatagatattttaaagtaacta |
37180235 |
T |
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| Q |
402 |
tgataaaatgataataatttttcctaataaattaacaactatt |
444 |
Q |
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| T |
37180236 |
tgataaaatgataaccatttttcccaataaattaacaactatt |
37180278 |
T |
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