View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_8 (Length: 428)
Name: NF20884_low_8
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 31024780 - 31024837
Alignment:
| Q |
92 |
aatgaatgaagtatagaaaattgtaaattgttcaaaatttggttaaaacgagaagagg |
149 |
Q |
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| T |
31024780 |
aatgaatgaagtatagaaaattgtaaattgttcaaaaattggttaaaatgagaagagg |
31024837 |
T |
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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 31072677 - 31072735
Alignment:
| Q |
92 |
aatgaatgaagtatagaaaattgtaaatt-gttcaaaatttggttaaaacgagaagagg |
149 |
Q |
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| T |
31072677 |
aatgaatgaagcatagaaaattgtaaatttgttcaaaatttgtttaaaacgagaagagg |
31072735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 31065347 - 31065403
Alignment:
| Q |
178 |
cagtcccacattgaaattctataactaatagacaccaaaagttacctataaaacaat |
234 |
Q |
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| T |
31065347 |
cagtcccacatcgaaactctgtaactaatagacacaaaaagttacctataaaacaat |
31065403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 31024867 - 31024954
Alignment:
| Q |
143 |
gaagaggcatgtgtatataccatcctggagctcaacagtcccacattgaaattctataactaatagacaccaaaagttacctataaaa |
230 |
Q |
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| T |
31024867 |
gaagaggcatgtgtgtataccattctggagttcagcagtcccaaatcgaaactatgtaaattatagacacaaaactttacctataaaa |
31024954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 33559833 - 33559890
Alignment:
| Q |
92 |
aatgaatgaagtatagaaaattgtaaattgttcaaaatttggttaaaacgagaagagg |
149 |
Q |
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| T |
33559833 |
aatgaatgaagcagagaaaattgtaaatggttcaatatttgggtaagacgagaagagg |
33559890 |
T |
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