View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20884_low_9 (Length: 411)
Name: NF20884_low_9
Description: NF20884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20884_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 28940327 - 28939944
Alignment:
| Q |
11 |
cacagaccaactctgccatatagaaattcttatgtgcttttccagctaaatttgtttctcatatatgacacactcactgaattccaaaacacattagact |
110 |
Q |
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| T |
28940327 |
cacagaccaactctgccatatagaaattcttatgtgcttttccagctaaatttgtttctcatatatgacacactcactgaattccaaaacacattagact |
28940228 |
T |
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| Q |
111 |
catatttaagctacatagtgccaacaaaacacacaccatcatattctctgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagtt |
210 |
Q |
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| T |
28940227 |
catatttaagctacatagtgccaacaaaacacacaccatcatattctctgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagtt |
28940128 |
T |
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| Q |
211 |
agtttaccccatacccttttgg-ttttacctcaaaagtttgttcttatccaaatagtctttgcttctgaaggctctataaatatacacacaaattcagaa |
309 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940127 |
agtttaccccatacccttttggtttttacctcaaaagtttgttcttatccaaatagtgtttgcttctgaaggctctataaatatacacacaaattcagaa |
28940028 |
T |
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| Q |
310 |
gctaaggtaactcattagagaggtttgagaaaagatggtgagatcttgctggaagccagctgtagatggtgatgatggagatgg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28940027 |
gctaaggtaactcattagagaggtttgagaaaagatggtgagatcttgctggaagccagctgtagatggtgatgatggggatgg |
28939944 |
T |
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